Protein

View in Explore
Genbank accession
XYM48713.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
Protein sequence
MATKKTKLPKPAGMNAQNRIGVLDLNELDDLFDDVGETTKPGDPVTDFKSGLKEGFLGGLKTKDIVRNFLRSAAPDGFARLFGAYDDVMASVTDIKDTVERVNASDLDYLGRKAQDYLPQLKDRIPNALYENISDTLTRKVEQYQYEVDSQRDQIAIRRRRQENDDANVIKAALDQNTLVSRENFQRSEQGAVARAAVERAERGIRDKVSAGRFDFMSRSMGMAVDSLTRLVGYNEQVNYGIQRKGLELQFRTYMGIRDLVKVQEANLELQNKAYEALVRNTGLPDYKKGNVGDLTSFGSGRGRGNMLGRLAGGAAQGLHGFLGSYGNKVNERVASGLGGRLSEIVAGLRMGDMAGSSVWDNRYKFAGQIAGEYGADILKSSIVPWAGRKVRPTMEKLSNRFGGRHHQVGYALDNVPAYLQEFVNNYQNTYGFRGVIRDAIMPFVPQYHMNDRLENGNYQTIDQGAAFNQLTQRSIVEVIPGYLSRQLQELRMIRTGRDDIEREVFDITTGRFEVQSLSDDRLQKKIIPAAAIRSASGAINDTLNLMDEEGKLSPAARKALGERMLRDASTNRRFDPEAYLKSGGYMDGLDATTTDEIQRFFKSKFQYDDKGKMADNAENHRLRDEYSRAFLDIRSVSRDPVKEVHRLINAGQTEPLRMLGIIITEQGQDRINYNRIWEIMRSGVTDTNPWVNGDYQPEASGDMNDKNFFGPAYPGAAKANALNAMRRFRNKHAPQEDRIKKELSRYSRIAQGKFQYLNNKHGAGIHDFANNMRNGQFGPYVAGLQGAWNDANVMGQDLYSKTRAKFGEHMDQFQNDPTQYAIGQKDKIIDVFTKFNPNEPIIKGIDFVQGNLVDFNTKKIIESVHDITGKVVSTTGMTVLTASEVAQGLFDKKGMRLELPAFMSNAADKIRGALMGGQTPPAQQFAEGENAQQKQAAEDDKHDWYLDGEQEPTISARGLKNGEYFNADGDQINSMQDIKGDVLDKNGSIIATAKELASGLWSRATRKRWRLTKTGRRLANVAGWGAKFMATNTSTLAWNALKFGAKTAIGMGSALFNFAIETQNAYLPGDDVPVLERRLVNAGKYFDDKGRVIENFGDVYGTIFNERGEPVIEPSLYKDLKNYDGTKHILAKNKGIIRKTVWRGIRAARSKYIDASMKYMGWALKKTGKFYGGAAKKVLGGFAKAGGNVLGRIFERVPYEDFETTDQVLLGRILETLQAQVPEKLRAGSWQDKAEKAKEGAAGLMDKLKGKGDGDTGKAENKVLKGLSDGLKGIFSKLTGTEGEEGSGAFDVLMGGGMKGGTKGRLMGLAKRAVPWILGGTAAAVGTGAMAYGYSKDGMDAKQTGILTAMSLNPLGQLTARYILKPIFGQMNDQRAEFRRLRMLQYGITDHDQQQKVSALEDAFDRVTERTEEPDFNISGVGGKAILDILGIDVKNEVQVMRMSRWLEMRFRPVFLTWVKALAKLKKNEVKLVDIDSKFPQELKGPLVKAVKISVSGDTPMQYRVDPFSEEGELEDTIPAADQLWKALYVRYKAGEKKDDTVPATAANTEVATKAQDIAKKAADTATGKTAPSPMDPTKSAMPLAAAKKAFPGLGGSTGAPIVATSAATTKLTALQSIRMRAYGLEVLSFYNVYPLLNAEAMVFDGLSIQGGVPEFRGDLESIMQETAPLFGKDIVGNDEDRSTYYDWFVGRFMPVARAYYGAMRNSTQGTTIANMESKLKPSDAVIVGNAVLGVTNWDGSSVWQVDSIFPIKGSKDDLKKMAEADLEQLKKDASKDIMSTPTQSAGDQAAGTQNAAAGGSFAERAMASISNTWESAKETVSNAWSNTKAAGAKAMDYVSDAAANTQYKLGMAGEVSATGRTYGTLTKGNGGAWEQIPYPKANKSRQAAAETFQTVAAMVGIPVELLFIFASLESGFDYTVKAKTSSATGWFQFINSTWDAMLAKHGSKFGIPPDDAQRSLRVDPRINALMGACFLKDNYTYLKDALGRDPTDVDLYIAHFMGPGGARKFLTRNQDTIGASVFPEAASANRPIFYKKGGQPRTLGEIYQMFEEKIAKHRGGAEGSSVATQEAGKTMTPEEATEEQAKANAKASAVELWNTDDSNNAGNAAVAREEAYSATGTAAQTPVLPGITPMNPVGGTTTSGTNPSADSGGNVIQAQQEAALQAAQQQNSTRQAEVRRNNEKAKQIDDIQAEQLKTLIEMRDHLKRLVQLNEQKDSSIKEASKTQAGGNNSMTSTLMRTTAAQNRPSPLSLT
Physico‐chemical
properties
protein length:2256 AA
molecular weight: 247267,20380 Da
isoelectric point:8,96505
aromaticity:0,07934
hydropathy:-0,51241

Domains

Domains [InterPro]
DC_0124
STR
1–917
DC_0124 G3DSA:1.10.530.10 DC_0834
DC_0124
STR
900–1962
DC_0124 Coil
IPR023346
STR
1892–2025
IPR023346
XYM48713.1
1 2256
Architecture
STR
RBD
STR 1-2025 | RBD 2026-2256
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage phiHQ
[NCBI] 		3402740 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Pseudomonas aeruginosa
[NCBI] 		287 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Pseudomonadales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XYM48713.1 [NCBI]
Genbank nucleotide accession
PV029745.1 [NCBI]
CDS location
range 108826 -> 115596
strand -
CDS
ATGGCTACAAAAAAGACCAAGCTGCCAAAACCTGCTGGGATGAATGCCCAGAACAGAATTGGTGTACTTGACCTTAATGAGCTGGACGACCTGTTTGATGATGTCGGTGAAACCACCAAACCTGGTGATCCAGTAACCGATTTCAAATCTGGTCTGAAAGAGGGCTTCCTCGGTGGATTGAAAACCAAAGACATCGTAAGGAATTTCTTACGAAGCGCAGCGCCTGATGGTTTCGCGCGTCTTTTTGGTGCCTATGATGATGTAATGGCTTCGGTAACCGATATCAAAGATACGGTCGAAAGAGTCAATGCATCCGACCTAGATTACCTTGGTCGTAAAGCACAGGATTATCTACCCCAGTTAAAAGATCGCATTCCAAATGCCTTATACGAAAATATCTCTGATACGCTCACCAGAAAGGTTGAACAATATCAGTACGAAGTGGATTCCCAAAGGGACCAAATCGCTATTCGTCGTCGTCGGCAAGAAAATGATGATGCAAATGTAATTAAAGCTGCTCTCGATCAGAATACGCTGGTAAGCAGAGAAAACTTCCAACGTAGTGAACAGGGTGCAGTTGCCCGCGCTGCCGTTGAAAGAGCAGAACGTGGAATTCGTGATAAAGTAAGTGCTGGACGCTTTGACTTTATGTCCCGTTCGATGGGGATGGCTGTAGATAGTCTAACTCGTCTTGTAGGATATAACGAACAAGTTAATTATGGAATTCAACGTAAAGGCCTTGAACTTCAGTTCCGTACCTACATGGGTATTAGGGATCTTGTTAAAGTACAAGAAGCTAATCTTGAATTGCAGAATAAGGCTTATGAAGCATTAGTTCGTAATACCGGCTTACCAGACTACAAGAAAGGCAATGTTGGCGATCTAACCAGTTTTGGTTCAGGTCGCGGCCGGGGCAACATGCTCGGACGCCTAGCTGGCGGAGCTGCACAGGGCCTTCATGGCTTCTTGGGTAGTTATGGTAACAAAGTAAACGAACGTGTTGCCAGCGGCCTGGGCGGACGTCTATCGGAGATCGTAGCCGGTCTACGCATGGGCGATATGGCTGGTTCATCCGTTTGGGATAATCGCTATAAGTTCGCTGGTCAAATCGCCGGTGAATACGGTGCCGATATCCTTAAATCGTCTATTGTTCCATGGGCAGGTCGTAAAGTTCGTCCGACTATGGAAAAACTATCCAACCGTTTTGGTGGACGCCATCATCAGGTAGGGTATGCCCTAGACAACGTTCCAGCATATCTACAAGAGTTCGTTAATAACTACCAAAACACTTATGGTTTCCGTGGCGTTATTCGTGATGCTATTATGCCATTCGTTCCTCAGTACCACATGAACGATCGTTTGGAAAACGGAAACTATCAAACAATTGATCAAGGCGCGGCCTTTAACCAATTGACGCAGCGTAGTATCGTTGAAGTCATCCCAGGTTACCTGTCTCGCCAGCTTCAAGAATTGCGAATGATTCGCACTGGTCGCGATGATATCGAGCGTGAAGTATTCGATATTACAACTGGTCGATTCGAAGTTCAATCGCTGTCGGATGATCGTCTTCAGAAGAAGATTATTCCAGCAGCAGCAATTCGAAGTGCGAGTGGTGCCATTAATGACACATTGAACTTGATGGATGAAGAGGGTAAACTTTCTCCAGCTGCACGTAAGGCACTTGGTGAACGTATGCTTCGCGATGCGTCTACAAACCGTAGATTTGATCCAGAAGCTTACCTTAAATCCGGCGGTTATATGGATGGCTTGGATGCCACAACCACGGATGAAATTCAAAGGTTCTTTAAGAGTAAGTTCCAGTATGACGATAAAGGTAAAATGGCAGATAATGCTGAAAACCATCGTCTACGGGATGAATACTCTCGTGCCTTCCTTGACATTCGTTCTGTAAGTCGTGACCCAGTTAAAGAAGTACATCGTCTTATTAATGCTGGTCAAACTGAACCTTTACGGATGCTCGGTATCATCATTACTGAACAAGGACAAGATAGGATAAACTATAACCGTATTTGGGAGATCATGCGCTCTGGCGTTACTGATACCAACCCATGGGTTAATGGTGACTATCAACCTGAAGCTTCTGGTGATATGAATGATAAGAACTTCTTTGGTCCTGCTTACCCAGGTGCAGCTAAAGCCAATGCGCTTAATGCAATGCGTCGTTTCCGAAATAAACATGCACCACAAGAAGATCGAATCAAGAAAGAACTATCTCGCTACAGCCGTATTGCACAGGGGAAATTCCAGTACCTGAACAATAAGCACGGCGCCGGTATCCATGACTTTGCTAACAACATGCGTAATGGCCAATTTGGTCCTTACGTTGCTGGTCTGCAAGGAGCTTGGAATGATGCGAATGTAATGGGTCAAGATCTCTATTCTAAGACACGTGCTAAGTTTGGAGAACACATGGATCAGTTCCAGAATGATCCAACCCAATATGCAATCGGTCAGAAAGATAAGATCATTGATGTGTTCACAAAGTTTAATCCAAATGAACCCATCATTAAAGGTATTGATTTTGTTCAAGGTAACCTTGTTGACTTTAATACCAAAAAGATTATCGAATCTGTACACGACATTACCGGTAAGGTTGTTTCTACAACTGGCATGACGGTTCTAACAGCATCTGAAGTTGCACAAGGTCTGTTTGATAAGAAAGGAATGCGTCTTGAATTACCTGCCTTCATGAGCAACGCAGCGGATAAAATCCGCGGTGCTTTAATGGGTGGACAAACGCCTCCTGCTCAACAGTTTGCTGAAGGTGAAAACGCACAGCAAAAACAAGCAGCTGAAGATGATAAGCACGACTGGTATTTGGATGGTGAGCAAGAACCCACTATCTCTGCTCGTGGTCTAAAGAACGGTGAATACTTCAACGCAGATGGTGACCAGATTAATTCGATGCAAGACATCAAAGGTGATGTACTTGATAAGAATGGATCTATTATCGCAACTGCTAAGGAACTAGCTTCCGGTCTATGGTCGCGTGCTACTCGTAAACGTTGGCGTCTTACCAAGACAGGTCGGCGTCTAGCAAATGTAGCGGGTTGGGGTGCCAAGTTCATGGCAACGAATACATCTACCTTAGCGTGGAACGCACTGAAGTTTGGTGCTAAGACAGCGATCGGTATGGGTTCGGCCCTATTCAACTTCGCGATTGAAACTCAGAACGCTTATTTACCTGGTGATGATGTACCTGTACTCGAACGAAGACTAGTTAATGCTGGTAAGTACTTCGATGATAAAGGTCGCGTCATTGAAAACTTTGGTGATGTGTATGGCACGATCTTTAACGAGAGAGGCGAACCTGTAATAGAACCATCTCTGTATAAAGACCTTAAGAACTACGACGGTACCAAACATATCTTAGCTAAGAATAAAGGTATCATCCGTAAGACTGTATGGCGTGGTATTCGCGCTGCTCGTTCGAAGTATATCGATGCTTCCATGAAGTACATGGGTTGGGCATTGAAGAAGACGGGTAAGTTCTATGGAGGTGCAGCTAAGAAAGTGTTAGGTGGTTTCGCTAAAGCGGGTGGTAACGTTCTTGGACGTATCTTTGAACGCGTACCATACGAAGACTTCGAAACAACTGATCAAGTACTATTGGGTCGCATTCTTGAAACTCTTCAAGCACAAGTTCCAGAAAAGCTCCGGGCTGGTAGTTGGCAGGATAAAGCAGAAAAGGCCAAAGAAGGCGCTGCTGGCTTGATGGATAAATTGAAGGGTAAGGGAGATGGCGATACCGGTAAAGCTGAAAATAAAGTCCTGAAGGGATTGTCAGATGGACTTAAAGGTATCTTCAGTAAACTTACCGGTACAGAAGGTGAAGAAGGCTCTGGTGCGTTCGACGTGCTGATGGGCGGTGGTATGAAAGGTGGCACTAAAGGTCGTTTAATGGGCCTTGCTAAACGCGCAGTTCCTTGGATACTTGGTGGTACAGCTGCCGCAGTGGGTACAGGTGCTATGGCTTATGGTTATAGCAAAGATGGAATGGATGCAAAGCAGACAGGTATTCTGACTGCAATGAGTCTTAATCCACTTGGACAATTAACTGCTCGCTATATCCTGAAACCTATCTTTGGTCAGATGAACGATCAAAGAGCAGAGTTCCGCCGACTCAGAATGCTACAGTACGGTATTACCGATCACGATCAACAACAGAAAGTTTCTGCACTTGAAGATGCTTTTGATCGCGTAACCGAACGGACAGAAGAACCCGACTTTAATATCAGTGGAGTTGGTGGTAAGGCTATTCTTGATATTCTTGGCATCGATGTTAAGAATGAAGTTCAAGTAATGCGTATGTCCCGCTGGTTGGAAATGCGTTTCCGTCCGGTCTTCTTGACTTGGGTTAAAGCACTAGCTAAACTCAAAAAGAATGAAGTCAAACTCGTTGACATTGATAGTAAGTTCCCTCAAGAATTGAAAGGACCATTAGTTAAAGCTGTTAAGATTTCTGTATCGGGTGATACACCAATGCAGTATCGTGTTGACCCATTCTCCGAAGAAGGCGAATTGGAAGACACTATCCCAGCAGCTGATCAACTTTGGAAAGCTCTATACGTTCGTTATAAAGCGGGCGAGAAGAAAGATGATACGGTACCTGCTACAGCGGCTAATACCGAAGTAGCTACCAAAGCTCAGGATATCGCCAAGAAAGCGGCAGATACAGCAACTGGTAAAACCGCACCGAGTCCAATGGATCCTACTAAGTCAGCAATGCCCTTGGCTGCTGCTAAGAAGGCTTTCCCTGGTCTGGGTGGTTCAACAGGTGCTCCAATCGTTGCGACTTCGGCAGCTACTACTAAGCTAACTGCACTCCAATCCATCCGGATGCGTGCCTACGGTTTGGAAGTACTGAGTTTCTACAACGTCTATCCTCTTCTCAATGCTGAAGCAATGGTATTCGATGGTCTATCTATTCAGGGCGGTGTTCCTGAATTCCGTGGTGACCTAGAATCTATCATGCAGGAAACAGCACCGTTATTTGGTAAAGATATCGTTGGTAACGATGAGGATCGTTCTACCTATTACGATTGGTTCGTTGGTCGTTTCATGCCTGTTGCTCGTGCTTACTACGGTGCAATGCGTAATTCGACTCAAGGAACAACCATTGCGAACATGGAATCTAAACTCAAACCCAGTGATGCTGTTATTGTGGGTAATGCCGTATTGGGCGTCACTAATTGGGACGGCTCTAGTGTATGGCAGGTTGATTCTATCTTCCCGATTAAGGGTAGCAAAGACGATCTCAAGAAAATGGCTGAAGCTGATTTGGAACAATTGAAGAAAGATGCAAGCAAAGACATCATGTCTACGCCGACTCAATCTGCGGGTGACCAAGCAGCTGGAACACAAAACGCAGCCGCTGGTGGTAGCTTTGCCGAGAGGGCAATGGCTTCTATCTCGAATACTTGGGAGTCTGCTAAAGAAACAGTAAGTAACGCATGGAGTAATACCAAGGCAGCTGGCGCTAAAGCAATGGATTATGTATCCGACGCTGCGGCGAACACACAGTACAAACTTGGTATGGCTGGCGAGGTATCTGCAACAGGTCGTACATACGGAACCCTGACAAAGGGTAACGGTGGAGCTTGGGAACAGATTCCATATCCGAAAGCCAATAAGTCTCGTCAAGCAGCTGCTGAAACATTCCAAACAGTTGCAGCGATGGTCGGTATTCCAGTAGAACTTCTGTTCATCTTCGCATCGCTTGAGTCTGGTTTTGATTACACCGTCAAAGCTAAGACATCGTCTGCAACCGGATGGTTCCAGTTTATTAATAGTACCTGGGACGCAATGTTGGCGAAACATGGCTCCAAGTTCGGTATTCCTCCAGACGACGCCCAACGTAGTTTACGTGTTGATCCTCGGATCAACGCCTTAATGGGTGCATGCTTCCTTAAAGATAACTACACCTACCTTAAAGATGCATTAGGACGCGATCCAACAGACGTAGATCTTTACATCGCTCACTTCATGGGACCAGGTGGTGCACGTAAGTTCTTGACTCGTAATCAGGATACCATCGGCGCATCGGTCTTCCCTGAAGCAGCATCTGCTAACCGACCGATCTTCTACAAGAAAGGTGGACAACCTCGTACTCTCGGGGAAATCTATCAAATGTTCGAAGAGAAGATTGCAAAGCATCGTGGTGGAGCTGAAGGTAGTTCTGTAGCTACACAGGAAGCGGGTAAAACCATGACTCCGGAAGAGGCGACAGAAGAACAAGCCAAGGCTAATGCTAAGGCGTCTGCTGTCGAACTTTGGAATACTGATGATAGTAACAATGCTGGTAATGCAGCGGTTGCTCGTGAAGAAGCATACAGTGCCACTGGTACTGCTGCCCAAACACCGGTACTTCCTGGTATTACTCCAATGAACCCCGTGGGTGGAACAACTACTAGCGGAACTAATCCATCTGCTGATAGTGGCGGTAATGTTATCCAAGCCCAACAAGAAGCAGCTCTTCAAGCAGCACAGCAACAGAACTCGACTCGTCAAGCTGAAGTACGTCGTAATAACGAGAAGGCTAAACAGATCGATGATATCCAAGCTGAGCAGCTTAAGACGCTAATTGAGATGCGTGATCATCTCAAGCGTTTGGTACAACTGAACGAACAAAAGGACAGTAGTATCAAAGAAGCTTCGAAAACCCAAGCCGGAGGAAATAATAGTATGACCTCCACGTTAATGAGAACGACCGCGGCTCAAAATCGCCCGTCACCCCTCTCGTTAACTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
1f420c9b7ca892478b58c1a63b6173d00b07648f18684913b1a4ce5b694de0e0
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,4990
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genome Characterization of Phikzvirus realted Pseudomonas phage phiHQ: A Promising Candidate Against Uropathogens Qamar,H., Khan,M.S.I., Afzal,S. and Malik,K. 2022-09-14 — GenBank