Protein

View in Explore
Genbank accession
WRQ13135.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TF
Evidence RBPdetect
Probability 0,90
Protein sequence
MSGFFTINRAPRLGVFAFDAVTNSRTTAKSKMTKIPLESGAEVNDHRIREANTYVIQGGMSNSPLKQNIDDIFSLGIGAASGVVQKGINDTLLNLGLAYTAGSDSVRSPTAAALLLLLKESGEPITVSTGLLTLENMVIETLDIEQNPNTDNGFIFTAQLSEWMYIKSSTNIVQASDLDQSVQEKATSKALIGEAGTETVSDQSWASEAFDSISEWVKDAGVELKESAERLRGSFGGGLL
Physico‐chemical
properties
protein length:240 AA
molecular weight: 25614,40400 Da
isoelectric point:4,59614
aromaticity:0,06250
hydropathy:-0,11042

Domains

Domains [InterPro]
DC_0601
STR
1–236
DC_0601
IPR048494
ATT
18–171
IPR048494
WRQ13135.1
1 240
Architecture
STR
ATT
STR
STR 1-17 | ATT 18-171 | STR 172-236 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage vB_VpM-pA2SJ1
[NCBI] 		3095964 Uroviricota > Caudoviricetes >
Host Vibrio parahaemolyticus
[NCBI] 		670 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WRQ13135.1 [NCBI]
Genbank nucleotide accession
OR813779.1 [NCBI]
CDS location
range 44335 -> 45057
strand +
CDS
ATGAGCGGATTTTTCACTATAAACCGGGCCCCTAGATTGGGCGTATTTGCCTTTGATGCTGTCACAAACTCAAGGACTACGGCCAAGAGCAAGATGACAAAGATCCCGTTGGAATCTGGCGCAGAGGTTAACGATCACCGAATTCGAGAGGCTAACACATACGTTATACAAGGCGGGATGTCTAATAGCCCACTAAAGCAAAACATAGACGATATATTCTCTCTTGGTATTGGTGCCGCTTCTGGCGTGGTTCAAAAGGGAATTAATGACACGCTATTAAATCTAGGTTTAGCGTACACCGCCGGATCTGATAGCGTTAGATCTCCAACGGCGGCGGCTCTTTTATTGCTGTTGAAAGAGTCGGGCGAGCCGATCACAGTATCAACCGGGCTATTAACGCTTGAAAACATGGTGATCGAAACTCTTGATATAGAACAGAACCCAAATACAGATAACGGATTTATATTCACGGCTCAGTTATCTGAATGGATGTATATCAAATCATCTACAAACATTGTACAAGCTAGCGACCTTGATCAAAGCGTACAAGAGAAAGCAACCTCAAAGGCGCTGATAGGCGAAGCGGGTACAGAAACCGTATCAGATCAATCATGGGCTAGTGAGGCATTTGATTCTATATCTGAATGGGTTAAGGATGCCGGAGTTGAGCTAAAAGAATCAGCGGAAAGATTGCGGGGTTCGTTTGGCGGCGGCTTGTTATAG

Genome Context

Genome Context

Tertiary structure

PDB ID
d2e00db47a63045e9eb32b560a42709887328529aa03731d6e9796e68cce8dbd
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7316
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequence of Vibrio virus vB_VpM-pA2SJ1 Lim,S.J., Park,S.Y. and Kim,J.H. 2010-07-29 — GenBank