Protein

View in Explore
Genbank accession
WZL14749.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence RBPdetect
Probability 0,55
Protein sequence
MGSTLTTIGRSKLASATPENQLNVTEIAVGDGDGGYPPISPSTTSLANEVWRGNASLPIRTDDDLVIIFEGSIPANIGGFVVREVGIFDDAGDLIAIGTTSEIEKPDLSSGSSVALTVRLHVLLDNASQVTLMFNDTTTIDHAGLGNRSAADSHPASAISTDALPDIGANAESDVQAVLALLKSGAIKRHQSSLSDSTDDRLLLTGAFGLGGEAIVSSDWNAITKSGFYTNDNNSQSELPGPYNTMMMIHINKGSNATQICMRSSLDDPRTWRRSRSLSGGQDVWGAWVEIQSDGYREISNANLAVKSGFYSLPFSSGNNAPIENSGTLIVVQGGQNQNYISQTFIQSNENDEERIFVRHKKLIDWTSWVELHHSGNSDEVGFIKYAITTVTPTGRYIKANGAAVSRTAYADLFAKVGTFWGPGDGSTTFNVPDLRGEFIRTWDDGRGVDSGRSFGTFQADEFKSHTHNVQTYGGDTTNNGNFIDSCDEASLAGSDNDAALATGGSETRPRNVSLIAWIRY
Physico‐chemical
properties
protein length:521 AA
molecular weight: 55712,54760 Da
isoelectric point:4,73033
aromaticity:0,07678
hydropathy:-0,31555

Domains

Domains [InterPro]
DC_1371
STR
1–395
DC_1371 SSF88874
IPR022225
ATT
3–139
IPR022225 cd19958 cd19958 IPR037053
IPR051934
Unmapped
4–138
IPR051934 SSF88874
IPR011083
ATT
384–440
IPR011083
WZL14749.1
1 521
Architecture
ATT
STR
ATT
STR
ATT 1-139 | STR 140-375 | ATT 376-440 | STR 441-521
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
WZL14749.1
1 521
Domain Start End Length (AA) Confidence
N-terminal 1 197 197 0,9737
Central domain 198 396 200 0,0096
C-terminal 397 521 124 0,9769
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-197
Central
198-396
C-terminal
397-521

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage vB_VpaM_XM1
[NCBI] 		3137906 No lineage information
Host Vibrio parahaemolyticus
[NCBI] 		670 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WZL14749.1 [NCBI]
Genbank nucleotide accession
PP580404 [NCBI]
CDS location
range 19825 -> 21390
strand +
CDS
ATGGGATCTACATTAACTACAATAGGCAGGTCAAAGCTTGCCAGCGCAACACCAGAAAACCAGCTTAACGTTACCGAAATTGCAGTTGGTGACGGTGACGGAGGCTATCCACCAATTAGCCCTAGCACCACATCATTGGCCAATGAGGTTTGGCGCGGAAATGCATCATTACCAATCAGAACTGATGATGATTTAGTCATTATATTTGAGGGTTCGATTCCGGCTAATATAGGCGGCTTTGTTGTTCGAGAGGTTGGTATATTTGATGACGCTGGCGATCTAATCGCTATCGGTACAACCTCAGAAATAGAAAAGCCAGATCTTTCATCTGGATCATCTGTTGCACTAACAGTTCGTTTGCATGTTCTTTTGGATAATGCCAGCCAAGTCACTTTGATGTTTAACGACACAACGACAATTGATCACGCTGGATTAGGAAACAGAAGCGCAGCGGATTCTCACCCAGCATCTGCAATTAGCACAGACGCACTACCGGATATTGGAGCTAACGCAGAATCTGACGTTCAGGCAGTTCTTGCTCTTCTTAAATCTGGAGCGATAAAAAGGCATCAATCATCACTTTCAGATTCAACAGATGATAGGTTGTTACTTACCGGCGCGTTTGGTTTGGGCGGAGAGGCTATTGTAAGTAGCGATTGGAACGCGATAACTAAAAGCGGATTTTACACCAATGACAACAACTCTCAGAGTGAATTGCCTGGTCCGTATAACACCATGATGATGATCCACATAAATAAGGGTTCGAACGCCACTCAAATATGCATGAGGTCAAGTTTAGATGACCCTAGAACATGGAGGAGGTCTAGGAGCCTTTCAGGAGGTCAGGACGTTTGGGGGGCATGGGTTGAGATCCAAAGTGATGGATACAGAGAAATATCTAACGCGAACTTGGCAGTCAAGTCTGGTTTTTACAGTCTTCCTTTTTCTTCTGGAAATAATGCGCCAATAGAAAATAGCGGAACTCTTATTGTTGTTCAGGGCGGTCAAAACCAAAATTACATTAGCCAAACGTTTATCCAATCAAACGAGAATGATGAAGAGCGAATTTTTGTAAGACACAAAAAGTTAATCGATTGGACTTCTTGGGTAGAGCTTCATCACTCAGGAAATAGTGACGAAGTTGGTTTTATTAAATACGCAATTACAACCGTAACTCCAACAGGCCGTTACATTAAAGCAAATGGCGCTGCGGTAAGCAGAACAGCTTACGCCGATCTTTTTGCAAAAGTCGGAACATTCTGGGGTCCTGGTGATGGTTCAACTACATTTAACGTTCCAGATCTTCGTGGAGAATTCATTCGAACGTGGGACGATGGTCGCGGAGTGGATTCAGGGCGTTCTTTTGGTACATTTCAGGCTGATGAGTTCAAGTCTCATACCCACAATGTTCAAACTTATGGTGGTGACACAACAAATAACGGCAATTTTATTGACAGTTGTGATGAAGCTTCACTTGCTGGAAGTGATAATGATGCAGCATTAGCAACAGGCGGTAGTGAAACAAGACCACGAAACGTATCCCTGATCGCTTGGATTAGATATTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
ea16dc32c468ef8cef32817a97e5f2685b3600c64ea5a75a37b89f4cd817ccf0
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7715
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Characterization and Genomic Analyses of dsDNA Vibrio phage vB_VpaM_XM1, Representing a New Viral Family Wei,Z., Li,X., Ai,C. and Dang,H. 2024-09-21 — GenBank