Protein

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Genbank accession
YP_009821803.1 [GenBank]
Protein name
tail protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MALISQSVKNLKGGISQQPDILRFPEQGAEQINGWSSETEGLQKRPPTVFTATLGGYTHLSWQGRKPLIHLINRDQNERYYVSFHGAGIRVHTLDGREVEVRGDMSYVTCQNPRDDLRMVTVADYTFIVNRNAIVRGNGQINYNLREDGDALISIRGGQYGRTFTININGAVVEYKIHNGVGAGAEQAVQETDAQWLVHKMIEQLRAHPNLKPWTFNAGSGFIHVIAPNTDNIRSIATNDGYGNTLMNVVMHQSQSFSKLPIEAPNGYTVKIVGDTSKTSDQFYVQYDATRKVWKEVAGWGIESGFNNATMPHALVREADGHFELKQLNWAGRTAGDDNTNPFPSIKDSTINDVFFFRNRLGFLAGENIVMSRTSKYFSLFPASVANLSDDDPIDVAVSHNRISVLKYAVPFSEELLLWSDQAQFVLSAQGILSPKTVELNLTTEFDVSDRARPYGIGRGIYFASPRASYTSLNRYYAVQDVSSVKSAEDMSAHVPSYIPNGVFSIRGSGTENFVSILSASAPSKIFIYKFLYLNEEIAQQSWSHWDFGEGVEVLAADSIGSTMYILARNKSHTYMCRLNFTKNSIDFGDEPYRLYVDHKTRISISPEAYDDDLYRTRIFMTDHYGMNFWTGDIYVVALDGQVHKFSPPDGGWPTGHPEIYLNGDWGNQEVFVGFAIPFRYVFSKFLIKKAADDGSTATEDIGRLQLRRAWVNYEDSGAFTVEVENTSRLFSYEMAGARLGSNALRVGGLNVGTGQFRFPVAGNAQLNEVRIISDHTTPLNVIGCGWEGNYLRRSSGI
Physico‐chemical
properties
protein length:798 AA
molecular weight: 89116,71050 Da
isoelectric point:5,95249
aromaticity:0,11404
hydropathy:-0,32168

Domains

Domains [InterPro]
IPR058003
TTP
1–798
IPR058003
YP_009821803.1
1 798
Architecture
TTP
TTP 1-798
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009821803.1
1 798
Domain Start End Length (AA) Confidence
N-terminal 1 139 139 0,9799
Central domain 140 350 212 0,1557
C-terminal 351 798 447 0,3107
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-139
Central
140-350
C-terminal
351-798

Taxonomy

  Name Taxonomy ID Lineage
Phage Shigella phage VB_Ship_A7
[NCBI] 		2562138 Uroviricota > Caudoviricetes > Autographivirales > Studiervirinae > Berlinvirus
Host Shigella flexneri
[NCBI] 		623 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009821803.1 [NCBI]
Genbank nucleotide accession
NC_048180 [NCBI]
CDS location
range 13946 -> 16342
strand -
CDS
ATGGCTCTTATTTCACAATCAGTAAAGAACCTGAAAGGCGGTATCAGCCAACAGCCAGACATCTTAAGGTTCCCGGAACAAGGTGCCGAGCAGATTAATGGCTGGTCTTCTGAGACTGAAGGTTTACAGAAGCGTCCACCCACAGTGTTCACTGCGACACTTGGTGGATATACTCACCTATCATGGCAGGGCAGAAAGCCACTAATTCACCTAATCAATCGCGACCAGAATGAGCGTTACTATGTGTCATTCCATGGTGCTGGGATTAGGGTTCACACTCTCGATGGACGCGAGGTAGAGGTACGCGGGGATATGTCTTATGTGACCTGTCAGAACCCAAGGGACGACCTAAGAATGGTCACTGTGGCTGACTATACATTTATTGTAAATCGCAATGCCATTGTCCGTGGTAATGGACAGATTAACTACAACCTCCGTGAAGATGGTGATGCCTTGATTAGCATTCGAGGAGGTCAGTACGGGCGTACATTCACTATCAACATCAATGGTGCTGTGGTGGAATACAAGATTCACAATGGTGTTGGTGCAGGTGCTGAACAGGCTGTGCAGGAGACAGATGCACAATGGCTGGTTCATAAGATGATTGAACAGCTACGTGCTCACCCTAACCTGAAGCCTTGGACGTTCAACGCAGGCTCCGGGTTTATCCATGTGATTGCCCCTAATACTGATAATATTCGTTCTATCGCCACAAACGATGGCTACGGAAATACCCTGATGAATGTAGTGATGCACCAATCTCAAAGTTTCTCAAAGCTGCCCATCGAGGCTCCTAATGGATATACGGTGAAGATTGTTGGGGACACTTCTAAGACTTCAGACCAGTTCTATGTTCAGTATGATGCGACCCGTAAAGTCTGGAAGGAAGTTGCTGGATGGGGTATTGAGTCTGGCTTCAATAATGCCACGATGCCTCATGCTCTTGTAAGGGAAGCTGATGGGCACTTTGAGTTGAAACAATTAAATTGGGCGGGGCGCACCGCTGGGGATGATAACACAAACCCATTCCCGTCAATCAAGGACTCCACGATTAACGATGTGTTCTTCTTCCGTAACCGCTTAGGGTTCCTCGCTGGTGAGAACATTGTGATGTCCCGCACTTCCAAGTATTTCTCACTGTTCCCTGCGTCAGTGGCTAACCTAAGTGATGATGACCCGATTGACGTGGCTGTATCACACAACCGTATCTCAGTCCTGAAGTACGCTGTACCGTTCTCCGAAGAGTTACTCCTATGGTCAGACCAAGCACAGTTCGTGTTATCTGCTCAAGGCATACTTTCCCCGAAGACTGTAGAGTTGAACTTAACTACCGAGTTCGATGTGTCAGACCGAGCGAGACCTTATGGGATTGGTCGAGGGATTTATTTCGCATCACCTCGCGCCAGCTACACGAGTCTTAACCGTTACTATGCGGTTCAGGACGTTAGTTCTGTTAAGTCTGCGGAGGACATGAGTGCTCACGTTCCTAGCTATATCCCTAACGGTGTGTTCTCCATTCGTGGCTCCGGGACTGAGAACTTCGTGTCAATCCTTTCGGCCTCCGCTCCGAGTAAGATATTCATATATAAATTCCTTTACTTGAACGAGGAAATTGCTCAACAGTCATGGTCACATTGGGACTTCGGTGAAGGCGTTGAGGTGCTTGCGGCTGACTCTATCGGCTCAACAATGTATATCTTGGCGAGAAACAAATCGCACACCTACATGTGCCGACTCAACTTCACTAAGAACTCAATCGACTTTGGGGACGAGCCATACCGACTATATGTGGACCATAAGACGAGGATTAGCATTAGTCCAGAAGCCTATGATGACGATTTGTATCGTACTCGCATCTTCATGACAGACCACTATGGGATGAACTTCTGGACTGGTGACATTTATGTAGTGGCTCTCGATGGACAGGTCCACAAGTTCTCACCGCCAGATGGGGGATGGCCTACCGGACACCCTGAGATTTACCTCAATGGCGATTGGGGAAACCAAGAAGTGTTCGTGGGGTTCGCCATTCCGTTCCGCTATGTGTTCTCCAAGTTCCTCATTAAGAAAGCCGCTGATGATGGTTCTACAGCTACTGAGGACATTGGTCGCTTACAGCTTCGCCGCGCATGGGTTAACTATGAGGACTCTGGTGCATTCACCGTTGAGGTAGAGAATACATCGCGACTCTTCAGTTATGAAATGGCAGGTGCTCGCTTAGGTTCCAATGCGTTACGTGTTGGTGGACTTAACGTTGGGACTGGTCAGTTCCGCTTCCCTGTGGCTGGCAATGCACAGTTGAACGAGGTTCGTATTATCTCCGACCACACGACACCACTTAACGTGATTGGCTGTGGATGGGAAGGTAACTACTTGCGTCGTTCTTCTGGTATCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
1a8fe8fc650a20716eef9b94d46245b903df13ca5ae0d09969853a389abba86c
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,3125
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Characterization, Genome Sequence, and Analysis of Shigella Phage VB_Ship_A7 Xu,J., Gu,Y., Yu,X. and Liu,X. 2020-10-26 — GenBank