Protein

View in Explore
Genbank accession
YP_010300547.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MLQQSCLYARGITPVFSGSPGNGTEAAVDAMGVDASRFTSFVVDGHALAYVCGFGAAFMNGQFVRDGSPLVDANYGWLGNYRNKSINNMGVLRHFLTQRGYNSNITNGSTMLVISDLAPVSDDTSMESWGQLVGYMQRMPLDMLAHSWQEINAGAYGYNGDYRYFKQFSCVMLLLSATNQSMPTAMLTAIREAHRNGVSLIVLQKNAYEGNVNFNAIFNPLGIRSNGQAYVVSTKAAHDKSINSFGNHVAWTNVPQLHNQINYRTSAIYQFNTTPAAGPGSLGGQPGTWKQLYCGQVDIPDDVVIDPPIIYRDPCCVEPGSAYGVNFDVTTYPYKPDDWAARLAAGDVSVSWSNQNGQSLQARSRLFSHVVGYQRHLDTGDLGYTVYAGTQYNDTRGLNVYKIRKSDLALLERRSFDIHASAEGTNPGAANAAACAAFLNSIGTDCYVFVVSYDTADVNRVQGGLPAAMYRIGASRRVFQGSQYVYRAAYCVFGEPGIGEGSAYTELYWGPKSSSPDSYYSVGFDFDSGNVPYCCGTDRAGNVGLGITGLYENTKSAHESYYKVLGGMDGAQTYGMKHTVTIRDNRFKKLPMYETKNFVVSVTNPCFPVPKVQSHDWVHRVNRAGSNYVRYAFKDLNEYLLTTSDGAGQNEMCTSHLMMNWDMFGSIGSGTIYNSAGASHKVYCGTSNGNINDPSSLYINTTEEGKVWHVYERPYQLITEMPDRDTNDWQVVWKWNGPGTQGHNIQIEAGYEYIVFAYDRYGDVELAERHFFVPPAEYLPKWGSNYYCRDFSNSTTFTVDRALRCNAYCEKSSNNGGENGIMMIIRRPLFLTTGSADRTGWECIFNNNSATVPRGNNYGIPCVKDYQYMILCSVGDGAYSSHHFNAWNGAFDMVWEGLFEADSGGRASWIANLQVLMQSGNSGGRTMDCFIDDNRAAPIGVFQVWRRPILCWEPSEIE
Physico‐chemical
properties
protein length:958 AA
molecular weight: 105992,10020 Da
isoelectric point:5,80016
aromaticity:0,12526
hydropathy:-0,32808

Domains

Domains [InterPro]
DC_0476
STR
1–958
DC_0476
PS52031
LEC
380–538
PS52031
IPR039477
STR
396–497
IPR039477
YP_010300547.1
1 958
Architecture
STR
STR 1-958
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_010300547.1
1 958
Domain Start End Length (AA) Confidence
N-terminal 1 10 10 0,0058
Central domain 11 220 211 0,9570
C-terminal 221 958 737 0,5518
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-10
Central
11-220
C-terminal
221-958

Taxonomy

  Name Taxonomy ID Lineage
Phage Erwinia phage pEa_SNUABM_2
[NCBI] 		2869547 Uroviricota > Caudoviricetes > Alexandravirus >
Host Erwinia amylovora
[NCBI] 		552 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010300547.1 [NCBI]
Genbank nucleotide accession
NC_061443 [NCBI]
CDS location
range 67124 -> 70000
strand -
CDS
ATGCTACAACAAAGTTGCTTGTATGCTAGAGGTATTACTCCAGTGTTCAGCGGCAGCCCTGGAAACGGTACAGAGGCTGCGGTAGATGCGATGGGTGTCGATGCCTCACGTTTCACCTCGTTCGTTGTAGATGGTCATGCGTTGGCTTATGTGTGTGGTTTCGGTGCAGCGTTCATGAACGGGCAATTCGTTCGTGACGGTAGCCCTCTGGTTGACGCAAACTACGGTTGGTTGGGTAATTACAGAAACAAATCCATCAACAATATGGGCGTGTTACGCCACTTCTTGACACAGCGCGGCTACAATTCGAATATCACCAATGGCAGCACAATGCTCGTCATCTCTGACCTTGCTCCTGTCTCTGATGATACCTCAATGGAATCTTGGGGACAGCTTGTAGGTTATATGCAACGTATGCCTCTAGATATGTTAGCACATAGCTGGCAGGAGATTAACGCTGGTGCATACGGCTACAATGGTGACTATCGCTATTTCAAACAGTTCAGTTGCGTAATGCTTCTGCTGTCGGCAACAAACCAAAGTATGCCTACTGCGATGTTGACTGCAATACGGGAAGCGCATCGTAACGGTGTTAGTCTGATTGTGTTGCAGAAGAATGCCTATGAAGGTAACGTTAACTTCAATGCTATCTTCAACCCGTTAGGTATTCGAAGCAATGGGCAAGCTTATGTTGTCTCCACTAAAGCCGCTCACGATAAGAGTATCAACTCGTTTGGTAACCATGTAGCGTGGACTAACGTTCCTCAACTGCATAACCAGATTAACTATCGCACGTCTGCTATCTATCAGTTCAACACCACGCCTGCTGCTGGGCCTGGATCACTGGGAGGTCAGCCAGGTACGTGGAAGCAGTTATACTGCGGTCAAGTTGATATACCTGATGACGTTGTGATCGATCCGCCTATCATCTACCGTGACCCGTGCTGCGTAGAACCTGGCTCGGCATACGGTGTTAATTTCGATGTGACAACGTATCCCTACAAGCCTGACGACTGGGCCGCTCGCCTTGCTGCGGGCGATGTGTCAGTCTCGTGGTCGAATCAGAATGGCCAATCGCTACAGGCACGAAGCCGTCTGTTCTCTCACGTCGTAGGATATCAACGCCATCTCGATACAGGTGATTTAGGTTATACTGTATACGCAGGTACTCAATACAACGACACTCGTGGCCTGAACGTCTATAAAATTCGTAAGTCAGACCTTGCGCTGCTTGAACGCCGCTCGTTTGACATTCACGCATCGGCCGAAGGTACTAACCCAGGTGCTGCTAACGCTGCTGCCTGTGCTGCGTTCCTCAATTCGATTGGCACCGATTGTTATGTCTTCGTTGTGTCTTATGATACAGCCGACGTTAACCGTGTGCAGGGCGGACTACCTGCTGCTATGTATCGCATTGGTGCATCGCGCCGTGTGTTCCAAGGCAGCCAGTATGTTTATCGTGCTGCGTACTGCGTGTTCGGTGAGCCTGGAATTGGCGAGGGTTCTGCATACACTGAACTCTACTGGGGACCTAAATCGAGTTCTCCTGATAGTTACTACTCGGTCGGCTTTGACTTCGATTCAGGCAATGTGCCTTACTGCTGTGGTACAGACCGTGCAGGTAACGTTGGTCTTGGTATCACTGGTTTGTACGAAAATACCAAGAGTGCGCATGAGTCGTACTACAAAGTGTTGGGTGGTATGGACGGTGCGCAGACATACGGCATGAAGCACACAGTAACGATTCGTGATAACCGCTTCAAGAAACTGCCGATGTACGAAACTAAAAACTTCGTCGTGTCTGTCACTAACCCATGCTTCCCTGTGCCGAAAGTTCAATCTCATGACTGGGTACATCGTGTCAACCGTGCAGGTTCTAACTACGTGCGCTATGCGTTCAAGGACCTTAACGAGTATCTGCTTACGACCTCGGACGGGGCAGGCCAGAACGAAATGTGTACCTCTCACCTGATGATGAACTGGGACATGTTTGGTTCTATCGGCTCAGGCACTATCTATAACTCTGCTGGTGCATCGCATAAAGTATATTGCGGTACGTCTAACGGTAACATCAACGACCCTAGTTCTCTGTATATCAACACGACAGAAGAAGGGAAAGTGTGGCATGTGTATGAGCGTCCGTATCAGCTTATCACTGAAATGCCTGACCGTGACACGAACGATTGGCAGGTTGTCTGGAAGTGGAATGGGCCCGGCACACAAGGACATAACATTCAGATCGAAGCAGGCTACGAGTACATCGTATTTGCGTATGACCGCTACGGTGATGTTGAACTTGCTGAACGCCACTTCTTTGTACCACCAGCAGAGTATCTGCCTAAGTGGGGGTCGAACTACTACTGCCGTGACTTCTCCAACTCGACTACATTCACTGTAGACCGTGCGCTGCGCTGCAATGCGTATTGCGAGAAGTCCAGTAACAACGGTGGTGAGAACGGTATCATGATGATCATCCGTAGACCGTTGTTCTTGACAACAGGCTCAGCGGACCGTACTGGTTGGGAGTGTATCTTCAACAATAACAGTGCGACTGTTCCTCGTGGTAACAACTACGGCATCCCTTGTGTCAAAGATTATCAGTACATGATCTTGTGTTCTGTAGGCGACGGCGCTTATTCTTCGCATCACTTCAATGCGTGGAATGGTGCTTTCGACATGGTATGGGAAGGGTTGTTTGAGGCTGACTCTGGTGGACGTGCTTCGTGGATTGCTAACCTGCAGGTGTTAATGCAGAGCGGTAACAGCGGAGGTCGTACAATGGACTGCTTCATTGATGACAACCGTGCTGCACCTATTGGTGTGTTCCAAGTGTGGCGTCGACCTATCCTCTGCTGGGAACCGAGTGAAATCGAGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
c122de04e0c73d4025e4c795ff5e7d89c837cc69854e063761573434f6b4be74
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,4199
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequence of Erwinia phage pEa_SNUABM_2 Kim,S.G. and Park,S.C. 2021-01-07 — GenBank