Protein

View in Explore
Genbank accession
WHM53128.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence RBPdetect
Probability 0,86
Protein sequence
MPKKIAPSQGLPYGWERGEDHWGGPVSDSQVFIDTFIFPVLQSLTFAAPPPNAVNGHSYSVAPNPTGAWQGHAGDVATYVENAWVFNTPKLGWRAYALSYNKFVWYNGTTWVEEASGDDPVNPNPDPSIKPKWYDIGVTVSDSMNKNEPILHLPIMDPMMLPANMQGSSFDMADGASTVYYQFRVQRNGSNVGTMTVEIGGFAATMTTVGGSPVSFAAGDRITIRAQDVPVAEMKNFGFVIRLGIM
Physico‐chemical
properties
protein length:246 AA
molecular weight: 26785,90430 Da
isoelectric point:4,97406
aromaticity:0,11789
hydropathy:-0,19472

Domains

Domains [InterPro]
DC_0494
STR
1–244
DC_0494
IPR021251
STR
32–112
IPR021251
WHM53128.1
1 246
Architecture
STR
STR 1-244 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Xanthomonas phage XAP3
[NCBI] 		3043621 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Xanthomonas citri
[NCBI] 		346 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Lysobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WHM53128.1 [NCBI]
Genbank nucleotide accession
OQ756160.1 [NCBI]
CDS location
range 33274 -> 34014
strand +
CDS
ATGCCGAAAAAGATAGCCCCCTCACAGGGGCTTCCCTATGGGTGGGAACGCGGCGAGGATCACTGGGGCGGCCCGGTATCTGACTCGCAGGTTTTCATCGACACATTCATCTTCCCGGTGCTGCAATCACTCACGTTTGCGGCACCACCACCGAACGCGGTTAACGGGCATTCGTATTCCGTTGCGCCAAACCCGACCGGCGCGTGGCAAGGCCATGCCGGTGATGTGGCGACCTACGTGGAAAACGCCTGGGTATTCAACACACCGAAACTGGGATGGCGTGCCTACGCGCTGTCCTATAACAAGTTCGTCTGGTACAACGGCACCACCTGGGTGGAAGAGGCGAGCGGGGACGACCCTGTCAACCCTAATCCGGATCCGTCCATCAAACCGAAGTGGTACGATATCGGCGTGACCGTGTCAGACAGCATGAATAAGAACGAGCCTATCCTGCACCTGCCGATCATGGATCCGATGATGCTGCCGGCAAATATGCAGGGTTCGTCTTTCGACATGGCGGATGGTGCCAGCACTGTGTATTACCAGTTCCGCGTCCAGCGTAACGGGTCAAACGTCGGCACCATGACCGTGGAAATCGGCGGGTTCGCTGCTACTATGACAACGGTAGGCGGCAGTCCGGTATCATTCGCAGCGGGTGACCGCATCACAATCAGAGCGCAGGACGTGCCGGTCGCTGAAATGAAAAACTTCGGCTTCGTCATCCGGCTCGGCATTATGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
ad556c2d0d05cfbc84177a932674f86e9e4daffb4fe908baae3b800fc35c3332
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8542
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Isolation characterization and In-vivo application of bacteriophages for the biocontrol of Citrus Canker Rehman,M.U., Khan,M.I., Hayat,A., Khan,I., Rizwan,M., Rehman,S., Ullah,Z. and Alvi,I.A. 2021-09-01 — GenBank