Protein

View in Explore
Genbank accession
ABD58000.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MGAELAKEYIDAWISYVSPAGQVFYLAGPQAPVAGAQNGFVLQEIRGVQAPITHLTSKGARQDGDTWNDSIYESAELDFTVEASGVTTQDTRREVRSWVDAWSPKKLGKFSWFTPENGEWWMDVRQHKNVPDVLSHVRSKRQVFTWTAVNNDAFWKSFDSVSAFGMTYEDETDEFDRVDHTGLGDGYIQTYTGDEDAGVCGTDGTVMRWYPGSSKGTRYVHNLFIADKPSSDNVIVSFTYSGIQRFPFPAPAVNELWARCGVVDDGEGGQAWDGSGIRMQLVGQNVSISVFKDHEMIHTWIRPLLIAPLWGEKWTLVCGSAKNGRQYRVLRGDPGFEVLSYTEPKTESYMDEDHRYTGHGMKATAGLLNTQVLPAEIHRFSFADNLQAGQSGHLALSNRGDQDGWPRYLCYGPGTFKFSNGPGAEPTITFGPLLEGQVVMLTTLPRLRSVIDLSPNQPTEQQLSAFQDLIKDLISFATNNNVPPLLQQFESWFGILPPQGNLYELLDGRFTVPIPPKPEDGPPETSFISVSISGATIDSKVVAALTPLRKWPE
Physico‐chemical
properties
protein length:553 AA
molecular weight: 61379,92150 Da
isoelectric point:4,98378
aromaticity:0,11212
hydropathy:-0,37269

Domains

Domains [InterPro]
DC_0305
ATT
1–155
DC_0305 IPR055681 DC_0307
IPR055681
STR
150–386
IPR055681
ABD58000.1
1 553
Architecture
ATT
STR
RBD
ATT 1-155 | STR 156-395 | RBD 396-553
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
ABD58000.1
1 553
Domain Start End Length (AA) Confidence
N-terminal 1 161 161 0,9587
Central domain 162 393 233 0,3505
C-terminal 394 553 159 0,3006
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-161
Central
162-393
C-terminal
394-553

Taxonomy

  Name Taxonomy ID Lineage
Phage Mycobacterium phage 244
[NCBI] 		2902792 Uroviricota > Caudoviricetes > Kostyavirus >
Host Mycobacterium
[NCBI] 		1763 cellular organisms > Bacteria > Bacillati > Actinomycetota > Actinomycetes > Mycobacteriales
Host Mycobacterium sp.
[NCBI] 		1785 cellular organisms > Bacteria > Bacillati > Actinomycetota > Actinomycetes > Mycobacteriales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
ABD58000.1 [NCBI]
Genbank nucleotide accession
DQ398041 [NCBI]
CDS location
range 18377 -> 20038
strand +
CDS
ATGGGGGCGGAGCTGGCGAAGGAATACATCGACGCATGGATTTCCTACGTCAGCCCAGCCGGTCAGGTGTTCTACCTGGCCGGTCCCCAGGCTCCCGTCGCGGGAGCGCAGAACGGCTTTGTCCTCCAAGAGATTCGGGGCGTTCAAGCCCCCATCACCCACCTGACAAGCAAGGGTGCTCGCCAAGACGGCGACACCTGGAACGACTCCATCTATGAATCCGCCGAGCTCGACTTCACTGTCGAGGCATCCGGCGTCACCACCCAGGACACCCGACGCGAGGTTCGCAGCTGGGTGGACGCCTGGAGCCCCAAGAAGCTGGGCAAGTTCTCCTGGTTCACCCCGGAGAACGGTGAGTGGTGGATGGATGTCCGCCAGCACAAGAACGTGCCGGATGTCCTCTCCCACGTCCGCAGCAAGCGTCAGGTCTTCACCTGGACCGCGGTCAACAACGACGCCTTCTGGAAGTCCTTCGACTCGGTCAGCGCCTTCGGTATGACCTACGAGGACGAGACCGACGAGTTCGACCGGGTCGACCACACCGGCCTGGGCGACGGGTACATCCAGACCTACACGGGCGACGAGGACGCAGGCGTCTGCGGCACCGATGGCACCGTAATGCGTTGGTACCCGGGAAGTTCCAAGGGCACCCGCTACGTGCATAACCTGTTCATCGCGGACAAGCCCTCCTCCGACAACGTCATCGTCTCCTTCACCTACAGCGGTATCCAGCGCTTCCCGTTCCCCGCACCCGCGGTCAACGAGCTCTGGGCGCGCTGCGGCGTGGTCGATGACGGCGAGGGTGGGCAAGCCTGGGACGGCAGCGGCATCCGTATGCAGCTGGTCGGCCAGAACGTCTCCATCTCGGTCTTCAAGGACCACGAGATGATCCACACATGGATCAGGCCGTTGCTGATCGCCCCGCTGTGGGGTGAGAAGTGGACGCTGGTGTGCGGCTCCGCCAAGAACGGCCGCCAGTACCGCGTGCTGCGCGGTGACCCCGGCTTCGAGGTGCTGTCCTACACCGAGCCCAAGACCGAGTCCTACATGGACGAAGACCATCGCTACACCGGGCACGGCATGAAGGCCACCGCGGGCCTGCTCAACACGCAGGTGCTCCCCGCGGAAATCCACCGCTTCTCCTTCGCCGACAACCTCCAGGCCGGTCAGTCCGGGCACTTGGCGCTGTCGAACCGCGGAGACCAGGACGGGTGGCCGCGCTACCTCTGCTACGGACCCGGCACCTTCAAGTTCAGCAATGGACCCGGCGCCGAGCCCACGATCACGTTCGGACCCCTCCTGGAGGGCCAGGTCGTCATGCTCACCACGCTGCCCCGGCTGCGCTCGGTGATCGACTTGTCGCCCAATCAGCCCACAGAGCAACAGCTCTCGGCATTCCAGGACCTCATCAAGGACCTGATCAGCTTCGCCACGAACAACAACGTCCCGCCGCTCCTGCAGCAGTTTGAAAGCTGGTTCGGCATCCTGCCCCCGCAAGGCAACCTGTACGAGCTCCTGGATGGGAGGTTCACCGTGCCAATCCCGCCGAAGCCGGAAGACGGCCCGCCTGAGACCTCGTTCATCTCGGTGTCCATCTCAGGCGCGACCATCGACAGCAAGGTGGTCGCCGCCCTAACTCCGCTGCGAAAGTGGCCCGAGTAG

Genome Context

Genome Context

Tertiary structure

PDB ID
f64d377c8ea1ac8a572602857e49da1fd41c5263088f1a83a45f5df82eda7aea
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8296
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Exploring the mycobacteriophage metaproteome: phage genomics as an educational platform Hatfull,G.F., Pedulla,M.L., Jacobs-Sera,D., Cichon,P.M., Foley,A., Ford,M.E., Gonda,R.M., Houtz,J.M., Hryckowian,A.J., Kelchner,V.A., Namburi,S., Pajcini,K.V., Popovich,M.G., Schleicher,D.T., Simanek,B.Z., Smith,A.L., Zdanowicz,G.M., Kumar,V., Peebles,C.L., Jacobs,W.R. Jr., Lawrence,J.G. and Hendrix,R.W. 2006 16789831 GenBank