Protein

View in Explore

Genbank accession

UZV39256.1 [GenBank]

Protein name

tail spike protein

RBP type

Evidence GenBank

Probability 1,00

TSP

Evidence DepoScope

Probability 1,00

TSP

Evidence RBPdetect

Probability 0,91

TSP

Evidence RBPdetect2

Probability 0,95

Protein sequence

MNPQFTQPKGSTSKETNKDSIARKFGCKKSEVVYAKTGQSLSGYKVIYDKVSQRAYSLPSNIGAVTVTSLVDGILTHSGGTVDLNELAMTRREFITLQGDFVSGVTINAKHEVVAYGNSRFRWDGDLPKVVPPNSEPVIPDWVNVDANPALSELAKSVGSSLVGYKPTGTTTTTGTVKGKLDSFIDFANDYCGGPITGQPDLTSQLQQAIIDAFNSGIADIKIVGDFYISGMILWYPGVRLIGGRYDSTLIRVSNTFPVGGTMFRSYRPPLWAAGCHGLSLENVYLVGRAAKDVYGIDINDASYFNLEGVRLDLFNKAISFNRWIDETRVDTGGTITYPNAHSAEMGGQSYFGTITRCYAGNCVTCVDFNGVVNRCTFISNTWTTSDLAYNFSNPRGVYETNTFITCNIEGVKSAFEWFFSINSPYHNVWINTSIDNGNPDITSLAKDGGRQTFIGLAIFPYGNPSLVNWYGINPNGHRSTVLGTDLGENLPEDQLKTQVREELHTLTGIANKQWAGQQVTETIPANGYKALNISVPGLKGNSAVIASLSAIYHGITVDAASNNTGIVSVIISNYTGSPIDVNAYLSVTGIAKSFL

Physico‐chemical properties

protein length:	596 AA
molecular weight:	64491,65960 Da
isoelectric point:	5,95413
aromaticity:	0,10235
hydropathy:	-0,12718

Domains

Domains [InterPro]

G3DSA:3.30.2020.50
ATT
1–93

G3DSA:3.30.2020.50 G3DSA:2.10.10.80 IPR011050

G3DSA:3.30.2020.50
ATT
1–95

G3DSA:3.30.2020.50 G3DSA:2.10.10.80 IPR012334

IPR040775
RBD
91–137

IPR040775 DC_1937

UZV39256.1

1 596

Architecture

ATT

STR

RBD

ATT 1-155 | STR 197-476 | RBD 477-595 |

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Domains [InterPro]

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
G3DSA:3.30.2020.50	ATT	G3DSA:3.30.2020.50	1	93	Merged direct domain	G3DSA:3.30.2020.50	N-terminal	Low	Positional only	289 proteins / 289 hits
G3DSA:3.30.2020.50	ATT	G3DSA:3.30.2020.50	1	95	Merged direct domain	G3DSA:3.30.2020.50	N-terminal	Low	Positional only	289 proteins / 289 hits
IPR040775	RBD	DC_0821	91	137	InterPro cluster	Tail spike TSP1/Gp66, N-terminal domain	Central	High	Text match	1281 proteins / 1285 hits
G3DSA:2.10.10.80	ATT	G3DSA:2.10.10.80	94	155	Merged direct domain	G3DSA:2.10.10.80	N-terminal	Low	Positional only	383 proteins / 383 hits
G3DSA:2.10.10.80	ATT	G3DSA:2.10.10.80	95	155	Merged direct domain	G3DSA:2.10.10.80	N-terminal	Low	Positional only	383 proteins / 383 hits
IPR011050	STR	IPR011050	197	476	Merged direct domain	Pectin lyase fold/virulence factor	Central	Low	Positional only	572 proteins / 572 hits
IPR012334	STR	IPR012334	198	451	Merged direct domain	Pectin lyase fold	Central	Low	Positional only	867 proteins / 867 hits
DC_1937	RBD	DC_1937	435	595	Novel HMM	DC_1937	C-terminal	Low	Positional only	18 proteins / 18 hits

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout

N-terminal

Central

C-terminal

UZV39256.1

1 596

Domain	Start	End	Length (AA)	Confidence
N-terminal	1	203	203	0,9942
Central domain	204	488	286	0,9913
C-terminal	489	596	107	0,9624

Legend: N-terminal Central domain C-terminal

3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring

N-terminal
1-203

Central
204-488

C-terminal
489-596

Taxonomy

	Name	Taxonomy ID	Lineage
Phage	Salmonella phage vB_Hercules_SET [NCBI]	2982876	Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host	No host information

Coding sequence (CDS)

Genbank protein accession

UZV39256.1 [NCBI]

Genbank nucleotide accession

OP423032.1 [NCBI]

CDS location

range 37574 -> 39364
strand +

CDS

ATGAATCCGCAATTTACTCAACCGAAAGGTTCTACCTCAAAAGAAACGAACAAAGATAGCATCGCCCGTAAATTTGGGTGCAAAAAGTCGGAAGTCGTTTATGCCAAAACAGGACAGTCCTTGTCTGGTTATAAAGTGATCTACGATAAGGTGTCTCAACGTGCCTATTCTCTTCCTTCTAACATTGGTGCTGTAACGGTCACCAGTTTAGTTGACGGCATCCTCACGCACTCTGGAGGCACCGTAGATTTAAATGAATTGGCAATGACACGCCGCGAGTTTATTACTTTGCAAGGAGACTTTGTTTCCGGTGTTACCATCAATGCTAAGCATGAAGTGGTCGCATACGGGAATAGTCGATTCCGATGGGATGGGGATCTGCCGAAAGTTGTTCCCCCTAATTCAGAACCTGTCATACCAGATTGGGTTAACGTTGATGCCAACCCAGCACTGTCCGAATTAGCGAAATCTGTTGGCTCGTCTCTGGTGGGATATAAACCAACGGGGACAACCACTACGACTGGTACGGTCAAAGGAAAATTGGATAGTTTTATTGATTTTGCAAATGACTATTGTGGTGGCCCAATTACAGGACAACCTGATCTCACTTCTCAATTGCAACAAGCAATTATTGATGCTTTTAATTCTGGTATTGCCGACATTAAGATTGTTGGGGATTTTTATATCTCTGGCATGATATTATGGTATCCAGGTGTTCGATTGATTGGTGGGCGTTATGACTCTACATTAATACGCGTTTCCAATACTTTCCCAGTGGGCGGGACAATGTTTCGTTCTTACCGTCCTCCACTATGGGCGGCGGGTTGTCATGGTCTATCTCTTGAAAATGTGTATTTGGTAGGCCGCGCCGCCAAGGACGTTTATGGCATAGATATCAATGATGCATCTTATTTTAATCTTGAAGGTGTGCGTCTGGATCTGTTTAATAAAGCAATTTCTTTTAATAGATGGATTGATGAAACTCGTGTAGACACGGGCGGTACAATTACCTATCCCAACGCGCATAGTGCCGAAATGGGTGGCCAATCATATTTTGGTACAATAACTCGTTGCTATGCAGGCAATTGCGTCACGTGTGTTGATTTTAATGGTGTGGTAAACCGTTGTACATTTATTAGCAACACATGGACAACTAGTGATCTGGCATATAATTTCAGCAACCCGCGTGGAGTTTATGAAACTAACACATTCATCACTTGTAATATTGAAGGTGTGAAGAGTGCATTTGAATGGTTCTTTTCTATAAATTCACCATATCACAATGTGTGGATTAATACGAGCATCGATAACGGGAACCCAGATATCACGAGTTTAGCGAAAGATGGTGGTCGACAGACATTTATTGGTTTAGCGATTTTCCCTTATGGAAACCCATCGTTGGTTAATTGGTATGGAATTAACCCCAATGGTCATCGGAGTACTGTCTTGGGTACTGATCTTGGGGAAAATTTACCAGAAGATCAGTTAAAAACTCAGGTTCGGGAAGAATTACACACTTTAACAGGTATTGCCAACAAGCAATGGGCTGGACAACAAGTAACTGAGACAATTCCCGCCAATGGTTACAAAGCATTGAATATTAGCGTGCCAGGATTAAAAGGTAACTCAGCAGTTATTGCTTCATTATCTGCCATATATCATGGTATTACAGTTGATGCCGCCAGCAACAACACTGGTATAGTTTCAGTAATAATAAGCAATTACACAGGTTCTCCAATTGATGTAAATGCTTACCTGAGTGTCACAGGCATAGCCAAAAGTTTCTTGTGA

Genome Context

Tertiary structure

PDB ID

3b2d6ae4feac73925b779f6dd93f69b497491d4260722a37b1edb92ce4a4ab42

ESMFold

Source ESMFold

Method ESMFold

Resolution 0,7331

Oligomeric State monomer

Download PDB

Model Confidence

Very high
pLDDT > 90

High
90 > pLDDT > 70

Low
70 > pLDDT > 50

Very low
pLDDT < 50

Protein

Domains

Domains [InterPro]

Domains [InterPro]

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

3D Structure with Domain Coloring

Domain Coloring

Taxonomy

Coding sequence (CDS)

Coding sequence (CDS)

Genome Context

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)

Model Confidence