Protein

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Genbank accession
YP_009279626.1 [GenBank]
Protein name
tail protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MIIMLDVSKEFNEAVKASNRRFETRIKIGNTIYTKKDINNWVYTSGSISGENLQIGSTFSNSIKIEFCSILENIKELTEITIEVGIATYDADYNYDNIPPEKVGSAKVGFAKLIHYRPTVFEYVPLGTFYVTSCDPDRNEKKTIVEASDRFVFMENEYVSDLTYPAKIRDVALEIANKSGSVINESNFAMIGTSLIMKPEGYTYRQALGLIAQFEAGYARFNRNNQLEIKQLGDPKYSIAPAEYFQKGLTKNELMYQVGGISCTVSVQTEEGTEQVTFFSGSNTGPQITLENKVMTQSLLDSIYQKIKSLNFYPFTLKWRGNPALETGDWITLADRDGTLFKTPNLSYVLTFSGGLTATSSADTNSSAQTVSSYSPPLNQIIKDLNSRVDAAGKNSVYDGNEEPPHPKVGDLWFKKNGPDDEIWIYSKLEDGTYDWVLQTSTRLSDEIQDKIDNSVPSDEIVKTINLSEEMDGKEWLKITGAKIWLTDQTRIDDAIIQDAMIGNLSASKLTAGTINASDVNIINLNASNISTGSLNAIDITGSTITGSKITSVGEDFTMAQDNGAITWGRNGDDKQVFKLYASTQNLKEGNMRLDVAESGSFSINSTKLNKNFISLSNPNNELRMYSRIDNISIYSDDLNDPMKTSHSLEYNSTMFRYLNSGKTNMPQLYVNSSGTFYIGDNDNYIKCASSNITVKTTKTIITGNLEINSFVNAKDNLSVQKNFMVYGSKNSVIKTESYGQRLLNAYETPEYLFADYGKAKTDENGSITVYIDPIFLETVNTDSKNYHVFVSPYGQGTVWVEDVDIDSFVIKSNIPNMEVSWNIVAYRRYYENVRLDHPQEEKEERDIIDESRN
Physico‐chemical
properties
protein length:854 AA
molecular weight: 95655,71060 Da
isoelectric point:4,80729
aromaticity:0,09953
hydropathy:-0,43642

Domains

Domains [InterPro]
DC_1421
STR
1–830
DC_1421
IPR012892
RBD
451–572
IPR012892
YP_009279626.1
1 854
Architecture
STR
STR 1-830 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009279626.1
1 854
Domain Start End Length (AA) Confidence
N-terminal 1 87 87 0,8929
Central domain 88 286 200 0,1749
C-terminal 287 854 567 0,2819
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-87
Central
88-286
C-terminal
287-854

Taxonomy

  Name Taxonomy ID Lineage
Phage Lactococcus phage PLgT-1
[NCBI] 		1815955 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Lactococcus garvieae Lg2
[NCBI] 		420890 Bacillota > Bacilli > Lactobacillales > Streptococcaceae > Lactococcus > Lactococcus garvieae

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009279626.1 [NCBI]
Genbank nucleotide accession
NC_031016 [NCBI]
CDS location
range 6125 -> 8689
strand -
CDS
GTGATAATAATGCTTGATGTTTCTAAAGAATTCAATGAAGCAGTTAAGGCAAGCAATAGAAGGTTTGAAACTAGGATTAAGATTGGGAATACAATCTATACAAAGAAAGACATCAATAACTGGGTTTATACAAGTGGTTCTATTTCTGGAGAAAATCTTCAGATTGGGTCCACTTTTTCTAACTCAATAAAAATAGAGTTCTGCTCCATTCTTGAAAATATTAAAGAGTTGACAGAAATTACTATTGAAGTTGGAATAGCAACATATGATGCAGATTATAATTATGACAATATCCCACCTGAAAAGGTTGGTAGTGCCAAAGTTGGGTTTGCTAAACTCATTCATTATCGACCGACTGTTTTTGAGTATGTTCCCTTAGGAACATTTTATGTAACGAGTTGTGATCCAGATAGAAATGAGAAGAAAACGATTGTTGAAGCAAGTGATAGATTTGTTTTCATGGAAAATGAATATGTTTCAGATTTAACATATCCTGCCAAAATAAGAGATGTAGCCCTTGAAATTGCCAATAAGTCTGGATCAGTAATTAACGAAAGCAATTTTGCTATGATTGGCACCTCACTTATTATGAAGCCAGAAGGTTATACTTATAGGCAAGCTTTGGGCCTTATTGCACAATTTGAAGCAGGCTATGCTCGTTTTAACAGGAATAACCAACTTGAGATAAAACAATTAGGTGACCCGAAATACAGCATAGCACCAGCGGAATATTTTCAAAAAGGACTTACCAAGAATGAATTAATGTATCAAGTAGGTGGTATATCTTGTACTGTGTCTGTTCAAACAGAAGAAGGAACTGAACAAGTTACCTTTTTTTCTGGAAGTAATACAGGACCTCAGATTACTTTAGAAAACAAAGTAATGACTCAAAGTCTGCTTGACAGTATCTATCAAAAAATAAAAAGTCTGAATTTCTATCCTTTTACATTAAAATGGCGAGGAAATCCTGCTTTGGAAACTGGAGATTGGATTACTTTAGCAGATAGAGATGGGACGTTATTCAAAACTCCTAATTTAAGTTATGTACTTACGTTCTCAGGTGGTCTAACAGCAACAAGTTCTGCAGATACTAATTCTTCGGCACAAACTGTATCGTCTTATTCGCCTCCACTCAATCAAATTATTAAGGATTTAAATTCAAGGGTTGATGCAGCAGGAAAAAACTCTGTTTACGATGGAAATGAAGAACCACCTCATCCTAAGGTTGGTGATTTATGGTTTAAAAAGAATGGTCCAGATGATGAAATATGGATATATTCAAAATTGGAAGATGGAACGTATGACTGGGTTCTTCAAACATCCACTCGTTTATCTGATGAAATACAGGACAAAATTGATAACTCAGTTCCCTCTGATGAGATCGTGAAAACAATAAATCTTTCTGAGGAGATGGACGGAAAAGAATGGTTAAAAATAACGGGGGCCAAGATTTGGTTAACTGATCAGACACGTATAGATGATGCGATTATCCAGGACGCTATGATTGGTAATCTTAGTGCATCTAAACTGACAGCAGGTACAATTAATGCTTCAGATGTGAATATCATAAACCTAAACGCTTCAAATATTTCAACAGGTTCACTCAATGCAATTGACATAACAGGTTCAACAATTACTGGTTCTAAAATTACCTCAGTAGGTGAAGATTTCACAATGGCTCAAGATAACGGAGCTATAACATGGGGAAGGAATGGTGATGATAAGCAGGTATTCAAACTATATGCAAGTACACAGAACTTAAAAGAAGGAAATATGAGATTAGATGTTGCGGAATCAGGCTCATTTTCTATTAATAGTACTAAGCTTAATAAAAACTTCATTAGTTTGTCTAATCCTAATAACGAGCTGAGAATGTACTCACGTATAGATAATATTTCTATTTATAGTGATGATTTAAATGACCCTATGAAAACTAGTCATAGCCTTGAGTATAACTCTACAATGTTTAGATATCTTAATAGTGGCAAGACAAATATGCCGCAGCTATATGTTAATAGTTCTGGGACTTTTTACATCGGGGACAATGATAACTATATAAAATGTGCAAGTTCAAATATTACAGTAAAGACGACCAAGACGATAATTACAGGTAATCTTGAAATTAATAGTTTTGTTAATGCAAAGGATAATTTATCTGTACAGAAAAATTTTATGGTTTATGGTTCAAAAAATTCTGTTATTAAAACGGAAAGCTATGGCCAACGATTACTAAATGCTTATGAAACACCCGAATATCTTTTTGCAGATTATGGTAAAGCAAAGACTGATGAAAATGGATCGATAACAGTTTATATCGATCCTATTTTTTTAGAAACAGTAAATACTGATAGTAAGAATTATCATGTTTTTGTTAGCCCATATGGACAAGGAACTGTGTGGGTAGAAGATGTTGATATTGATTCATTTGTGATTAAGAGTAATATTCCTAATATGGAAGTATCATGGAATATTGTTGCGTACCGGAGATACTATGAAAATGTACGTTTAGATCATCCACAAGAAGAAAAAGAAGAAAGGGACATTATAGATGAATCAAGAAATTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
7ad2c090f4139e560274584298a22af47e1152cdfe78f487df8abd5cccb65009
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7103
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50