Protein

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Genbank accession
QBJ00583.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,74
Protein sequence
MSSRADMIGSGPSSGHYQAGPTPTEEKSMPTYINDELLTLGGIVNGILEGGAFPPQGKMPVRWREGMMMYFTEPLDDVYNVGQYKGQKIITSAGVWLYRRERWWKIIDDPSSITGAVFAYRLTADGTPPSTPSPSSAPPSGWTEVAPVKNNKSEWIWVTMSAAYDENTDIHTWSQPTPFSAGVVDGIDGEDGQDGAPGLDGRIFEQWFQEAASIPQVPSNVYPPPAPWSTTPPSNPTNPVWMTFIKVREDGTDPVYPWSFPQKITGTDGEDGDIGPTGPPGEDGTRGTLNVSKAISGSTWSNLEAYNAIVNDPNSDGVVRYWDTVTLFNSVSQFSEMRYYTGGTGSSSTWQPVELFVDGDAIINGTIAANKLVANTITASQIAAGTITGNEINSGTRITIGGSAGQDVVILDASDANSRIWVGNTTATSANFRVSPTGDLYANNGYFGGEVTYQGITGAIGGAVYSGSTSATPDWSEWYVDSAAATPTAIMARVTIPRQNYDRVAVITCIPSLLICTSRTNVDRFGIAWTAANSTGSTLNYHYRVTSVTETGAGYSTTGNSASAFEFVAQNANQAWFKLTNTLAWEVFIPATTSTGNLTIDLKAQFLHATGQTFPVSNFVTFKVPNSTVNVEVSKVNSGISISN
Physico‐chemical
properties
protein length:644 AA
molecular weight: 68865,29770 Da
isoelectric point:4,53731
aromaticity:0,10248
hydropathy:-0,26087

Domains

Domains [InterPro]
DC_0392
STR
1–198
DC_0392
IPR057549
STR
180–387
IPR057549
DC_1333
STR
194–644
DC_1333
QBJ00583.1
1 644
Architecture
STR
STR 1-644
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QBJ00583.1
1 644
Domain Start End Length (AA) Confidence
N-terminal 1 299 299 0,9889
Central domain 300 498 200 0,1519
C-terminal 499 644 145 0,9984
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-299
Central
300-498
C-terminal
499-644

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage vB_VpP_BA6
[NCBI] 		2530170 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Vibrio parahaemolyticus
[NCBI] 		670 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QBJ00583.1 [NCBI]
Genbank nucleotide accession
MK483107.1 [NCBI]
CDS location
range 33339 -> 35273
strand -
CDS
ATGTCAAGCAGAGCAGATATGATTGGTTCAGGTCCAAGCTCAGGTCACTACCAAGCTGGTCCGACACCTACGGAAGAGAAGTCAATGCCAACTTATATCAATGATGAACTCTTGACGTTAGGTGGTATTGTTAATGGTATTTTGGAGGGTGGTGCATTTCCACCCCAAGGTAAGATGCCAGTACGTTGGCGTGAGGGTATGATGATGTACTTCACAGAGCCTCTAGACGACGTTTATAATGTAGGTCAATACAAAGGTCAGAAGATTATCACTTCAGCCGGTGTGTGGCTTTACAGACGCGAGAGATGGTGGAAAATCATTGATGACCCATCAAGTATTACAGGTGCAGTATTTGCTTACAGACTTACTGCTGATGGTACACCTCCATCAACTCCATCACCATCATCTGCTCCACCAAGTGGCTGGACTGAAGTAGCTCCAGTTAAGAACAACAAGTCTGAATGGATTTGGGTTACTATGTCAGCAGCTTATGATGAGAACACAGACATTCATACTTGGTCACAGCCTACTCCATTTAGTGCAGGTGTCGTGGACGGTATTGACGGTGAAGATGGTCAGGATGGTGCTCCGGGTTTAGATGGTCGTATCTTTGAGCAATGGTTCCAAGAAGCGGCTAGCATCCCACAAGTACCTAGCAATGTATATCCACCACCAGCACCTTGGTCTACTACACCACCAAGTAATCCTACTAACCCTGTATGGATGACATTCATCAAGGTTCGTGAGGATGGTACTGACCCTGTTTATCCTTGGTCATTTCCTCAGAAGATTACTGGTACAGATGGTGAGGATGGCGACATCGGTCCTACAGGCCCACCGGGTGAAGATGGTACTCGTGGTACTCTTAATGTCTCTAAAGCTATCTCAGGAAGCACATGGAGCAATTTAGAGGCATATAATGCTATCGTCAATGACCCTAACTCTGATGGTGTGGTTCGTTACTGGGATACTGTTACATTGTTTAACTCTGTAAGCCAATTCTCAGAAATGCGATACTACACAGGAGGTACTGGTTCATCTAGTACATGGCAACCTGTTGAACTGTTCGTAGATGGTGATGCAATCATCAATGGTACAATCGCAGCTAATAAGCTAGTAGCTAACACCATTACTGCTAGTCAGATTGCAGCAGGTACTATTACAGGCAACGAGATTAACTCAGGGACACGTATTACCATTGGCGGTAGTGCAGGTCAAGATGTAGTCATTCTAGACGCTAGCGACGCTAATAGCCGCATTTGGGTGGGTAATACTACAGCAACCTCGGCTAACTTCAGAGTGTCTCCTACTGGTGACTTGTATGCTAATAACGGCTACTTCGGTGGTGAGGTTACATACCAAGGTATTACTGGCGCTATTGGTGGTGCTGTATATAGCGGGTCTACTAGTGCAACACCTGACTGGTCTGAGTGGTATGTAGATAGTGCAGCAGCTACACCAACTGCTATTATGGCTCGTGTAACTATCCCACGTCAGAACTATGACCGTGTGGCTGTTATTACTTGCATCCCATCGCTATTGATTTGTACATCACGTACTAACGTTGATAGGTTTGGTATTGCATGGACTGCTGCTAACAGTACAGGCTCTACACTTAATTACCACTACCGTGTAACATCTGTTACTGAAACTGGAGCAGGTTATTCAACTACAGGTAACTCTGCATCTGCATTTGAATTTGTAGCACAGAACGCTAACCAAGCATGGTTTAAACTAACCAATACATTGGCTTGGGAAGTATTTATTCCTGCTACAACTTCAACAGGTAACTTGACAATTGACCTTAAAGCACAGTTCCTACATGCAACTGGTCAGACATTCCCTGTATCTAACTTTGTAACATTCAAAGTTCCTAACAGTACAGTGAACGTAGAGGTTAGTAAAGTCAACTCAGGTATCAGTATTTCAAACTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
df429418c5289e998e71fae2e86ea7187a74a0ed7ab7beb4bdc8ed4b59cd0a42
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6292
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genome Characterization of a Novel phage vB_VpP_BA6 lysing Vibrio parahaemolyticus Yang,M., Liang,Y. and Wu,Q. 2019-07-30 — GenBank