Protein

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Genbank accession
YP_009147344.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TSP
Evidence DepoScope
Probability 0,99
TF
Evidence RBPdetect
Probability 0,90
TF
Evidence RBPdetect2
Probability 0,96
Protein sequence
MADYNLSELNSIDTIRSDDLLHVRVKKRPEMLGDEDRRMTYQDLLASFKLERFVQIAGSNMTGDLGIVKLLYGGKAVFDPTGSSEINIGDVLKTFKINANGLRLTITDASRSATVYHTLNKPSPNELGMRTNEENDARYARLAVTNNFNIRQAIVVDGEQLTLKKATNAGASYIQGRNANNQQTWYVGQGNANNTNVYLYNHATGSMLTLDATASFNKTLRVMGQVQPSDFSNLDARYFTQTVANQRFAQLTANNTFRGVNTFNQILSIETNSAALRLKNTVANGALYIKGESNDGSSKWYVGNGDNTPAVLIHNYTYGSNLRLDNGYVEVNKQLKVVGQVQPSDWTNIDSRYIPAGTLSNLAKLNVSNTFTNVQTIVSDNEGLVLRSLTQGQPQYIRGVDTANVSRWWLGAGSANSNVVTLSNSFSGTQISLEPTLVSMNKNLYINGQVQPQDWSNLDARYFVKTKLLDQSLMTVTVNNLEDHPAFNLGYSGFVRNNGVTDGLRDLAIHVAHSSKTAAYARGISFSYGSMGLGVFTYAYDDEGEYAGEAQLYTTDFKPTPSDIGAYTKAETDQKIAQAVSDSTDLNKIYPVGIVTWFNSNVDPNTALPGLTWTYLNNGVGRTIRIAAANGSDVATTGGSDSVTLSVGNLPSHTHSFSATTSSFDYGTKGTNTTGGHTHSGSGSTSTNGEHSHYIEAWNGTGRGGDKMSSYAVSYRTGGSNTNAAGNHSHTFSFGTSGAGDHSHSVGIGAHSHTVSGNTGGTGSGSAFSVTNQFYKLMAWVRTA
Physico‐chemical
properties
protein length:784 AA
molecular weight: 84582,14900 Da
isoelectric point:6,68406
aromaticity:0,08929
hydropathy:-0,40893

Domains

Domains [InterPro]
DC_1566
STR
65–784
DC_1566
G3DSA:6.20.80.10
STR
157–218
G3DSA:6.20.80.10 G3DSA:6.20.80.10 G3DSA:6.20.80.10 IPR053827 IPR005003 IPR005003
IPR048388
ATT
158–247
IPR048388 IPR048388 IPR048388 IPR051934
YP_009147344.1
1 784
Architecture
STR
ATT
STR
ATT
STR
ATT
STR
ATT
STR
STR 65-157 | ATT 158-247 | STR 248-274 | ATT 275-360 | STR 361-381 | ATT 382-466 | STR 467-586 | ATT 587-716 | STR 717-784
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009147344.1
1 784
Domain Start End Length (AA) Confidence
N-terminal 1 65 65 0,9897
Central domain 66 264 200 0,1960
C-terminal 265 784 519 0,8228
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-65
Central
66-264
C-terminal
265-784

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage vB_EcoM-VpaE1
[NCBI] 		1555238 Uroviricota > Caudoviricetes > Andersonviridae > Felixounavirus > Felixounavirus VpaE1
Host Escherichia coli B
[NCBI] 		37762 Bacteria > Proteobacteria > Gammaproteobacteria > Enterobacteriales > Enterobacteriaceae > Escherichia

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009147344.1 [NCBI]
Genbank nucleotide accession
NC_027337 [NCBI]
CDS location
range 51262 -> 53616
strand +
CDS
ATGGCAGATTACAATTTGAGTGAATTAAACTCAATCGATACAATCCGTTCAGATGACCTTCTTCATGTCAGAGTTAAAAAGAGACCTGAAATGCTTGGCGATGAAGACCGTCGAATGACTTATCAAGATTTATTAGCGTCTTTTAAACTTGAAAGATTTGTTCAGATTGCTGGTAGTAATATGACAGGTGACTTAGGGATTGTTAAGTTACTTTATGGTGGTAAGGCAGTATTTGACCCAACAGGCTCTTCTGAGATTAATATTGGGGATGTTTTAAAGACTTTTAAAATTAACGCAAATGGTCTTAGGCTAACTATTACAGATGCTTCAAGGTCAGCAACTGTTTATCATACTCTGAATAAACCAAGTCCTAATGAACTTGGGATGAGAACTAATGAAGAGAATGATGCAAGATATGCAAGGTTGGCTGTAACAAATAACTTCAACATTAGGCAAGCAATTGTCGTTGATGGTGAGCAGTTAACTCTTAAGAAAGCAACTAATGCAGGAGCTTCATATATTCAGGGTAGAAATGCTAATAACCAGCAAACGTGGTATGTTGGACAGGGAAATGCAAACAACACTAATGTTTATCTGTACAATCATGCCACTGGCTCAATGTTAACCCTTGACGCAACAGCGTCATTTAACAAGACACTAAGAGTCATGGGTCAAGTTCAGCCTTCTGACTTCTCTAACTTAGATGCTAGATACTTCACTCAGACAGTTGCTAATCAGAGGTTTGCACAGTTAACTGCGAATAATACTTTTAGAGGCGTGAATACATTTAATCAAATCCTATCAATTGAGACGAATAGTGCAGCCTTAAGGTTAAAAAATACTGTAGCTAATGGTGCACTGTACATTAAAGGTGAAAGTAATGATGGCTCTAGTAAGTGGTATGTAGGTAATGGTGATAATACACCTGCCGTATTAATTCACAACTATACATATGGGTCTAATCTTAGACTCGACAATGGTTATGTTGAGGTTAATAAGCAACTTAAAGTCGTTGGTCAAGTTCAACCTTCTGATTGGACTAACATTGACTCTAGATATATTCCGGCAGGAACTTTGAGTAATCTTGCTAAACTTAATGTATCTAATACTTTCACAAATGTGCAAACTATTGTGTCTGACAACGAGGGTTTGGTATTAAGGAGCTTAACACAGGGACAGCCACAATATATCCGTGGTGTTGATACTGCGAATGTATCTAGGTGGTGGCTGGGCGCAGGAAGTGCTAATTCTAACGTGGTAACCTTGAGCAACAGCTTTTCAGGCACTCAAATTTCCCTAGAGCCAACATTGGTTAGTATGAATAAGAACCTGTATATTAATGGGCAGGTTCAACCACAAGATTGGTCTAACTTAGATGCTAGATACTTTGTTAAAACTAAGTTATTAGACCAATCCTTAATGACTGTAACTGTAAATAACCTCGAAGACCACCCAGCATTTAATCTTGGGTACTCAGGCTTTGTCAGAAACAATGGTGTTACTGACGGCTTGAGGGATTTGGCAATTCATGTTGCACACTCTAGCAAGACTGCTGCATATGCAAGAGGTATCTCTTTTTCGTATGGCTCAATGGGTTTAGGGGTATTCACCTATGCCTATGATGACGAGGGTGAATACGCTGGAGAAGCACAGCTTTATACAACTGATTTTAAACCAACACCTTCAGATATTGGTGCATATACTAAAGCTGAAACTGACCAGAAGATTGCACAGGCAGTAAGTGACTCTACAGACCTTAATAAAATCTATCCAGTAGGTATTGTAACGTGGTTTAATAGTAACGTTGACCCTAATACAGCACTTCCTGGTCTAACTTGGACGTACCTGAATAATGGTGTTGGTAGAACTATCAGAATCGCAGCAGCAAATGGTTCAGATGTTGCTACAACAGGTGGTTCAGATTCTGTGACGCTATCTGTTGGTAACTTGCCATCACACACCCATAGTTTCTCTGCTACCACTTCATCTTTTGATTATGGTACGAAGGGAACTAACACTACAGGTGGACACACTCACTCTGGTAGTGGTTCTACTAGCACAAATGGTGAGCACAGCCACTACATCGAGGCATGGAATGGTACTGGTAGAGGTGGTGATAAGATGTCATCATATGCCGTATCATACAGGACGGGTGGGAGTAACACTAATGCAGCAGGGAACCATAGTCATACTTTCTCTTTTGGTACTAGCGGTGCTGGCGACCATTCCCACTCTGTAGGTATTGGTGCTCACAGTCACACAGTCAGTGGTAATACTGGTGGTACAGGTTCTGGTTCAGCATTTAGTGTTACCAACCAGTTCTACAAGTTAATGGCTTGGGTAAGAACTGCTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
dd69167cc77112fe23dd3554325e03f7ef80275710e904c0d0bef0393e3d8c7a
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6908
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genome of Escherichia coli infecting bacteriophage vB_EcoM-VpaE1 Truncaite,L., Simoliunas,E., Zajanckauskaite,A., Kaliniene,L., Vilkaityte,M. and Meskys,R. 2012-05 — GenBank