Protein

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Genbank accession
ANN87086.1 [GenBank]
Protein name
receptor-binding protein
RBP type
TSP
Evidence DepoScope
Probability 0,97
TSP
Evidence RBPdetect
Probability 0,90
Protein sequence
MGFFAGKYSDGKTVLSLNTESGGDINRHYSPNNNSIFHSDMPFVLVDGTYEAGLGDAGNGFFVCQMPSDIINIKSNDPGRVILTAIEINGTHRAFLNGTQSKVGQTIVATQAGPFRSFASVSQTSGFAFGNSLASGTYNYNPSIGHEESISRSGTGGTTLHSTYHGIVRPGAGAPVGVTVAEAFAQLGFPTNSSTVPVDGNNPYYWDPGWMSPLGAAHRGHDWFYVCNSNIRGYGGVRQGLPGNVNTMYHDGGNRFVCRGSTTNLANQSGNPTVIQDWYNITPTKVIWYVLNLRYSNGGMSISGNPFTGSDILISPSNFIIKGVSLPNTGYKFINQNAFGNLGYRPDMEFIGNNAAYTGVFGDTTARCELVGSSNGGLWSPVDYGGAKSQISIYKFGVGKQWYVNSNDNTIGNEHGVVWGPSAVPLRLFGGNVGSSYMGDDITPYYPGTGDRYVGLSTIGLGIPGGNATVILTTEVISGNLNCAGVPANTWNDRVFQVQGRKAHSYGNGDAIFHQILTLPVGYLVPFHTTAAFRYTPNNALSRNSFIYTVKNLGNGNVELGVVMHVSLGSAVFLPRLRVTVQRLT
Physico‐chemical
properties
protein length:585 AA
molecular weight: 62442,87870 Da
isoelectric point:8,14476
aromaticity:0,11282
hydropathy:-0,16188

Domains

Domains [InterPro]
IPR059609
RBD
1–585
IPR059609
ANN87086.1
1 585
Architecture
RBD
RBD 1-585
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
ANN87086.1
1 585
Domain Start End Length (AA) Confidence
N-terminal 1 10 10 0,1053
Central domain 11 209 200 0,4615
C-terminal 210 585 375 0,8502
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-10
Central
11-209
C-terminal
210-585

Taxonomy

  Name Taxonomy ID Lineage
Phage Shigella phage SHSML-45
[NCBI] 		1863010 Uroviricota > Caudoviricetes > Demerecviridae > Tequintavirus > Tequintavirus SHSML45
Host Shigella sonnei
[NCBI] 		624 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
ANN87086.1 [NCBI]
Genbank nucleotide accession
KX130863 [NCBI]
CDS location
range 21949 -> 23706
strand -
CDS
ATGGGTTTTTTCGCTGGAAAATATAGCGATGGTAAGACCGTACTATCTTTAAATACTGAATCTGGGGGTGACATTAATCGTCACTATAGTCCAAATAATAATAGTATTTTTCATAGTGATATGCCATTTGTTCTAGTTGATGGTACTTATGAGGCAGGATTAGGGGATGCCGGGAATGGGTTTTTTGTCTGTCAGATGCCCTCTGACATAATAAATATTAAATCCAACGACCCAGGTAGAGTTATACTAACTGCTATTGAGATTAATGGTACTCATAGGGCTTTTCTTAATGGTACTCAGAGTAAAGTTGGTCAAACTATAGTTGCTACTCAAGCAGGTCCCTTTAGATCTTTTGCTAGTGTTTCTCAAACCAGTGGATTTGCATTTGGTAACAGCCTCGCATCTGGAACTTATAATTATAACCCCTCGATAGGGCACGAAGAATCTATCTCTAGGAGTGGCACAGGTGGTACTACGTTACATAGTACCTACCATGGTATAGTTAGGCCTGGTGCGGGAGCTCCTGTAGGTGTTACTGTTGCAGAAGCTTTTGCACAATTAGGGTTTCCTACTAACAGTAGCACAGTACCTGTAGATGGGAATAACCCGTACTATTGGGATCCTGGATGGATGTCGCCTCTAGGAGCAGCGCATAGAGGGCATGATTGGTTTTATGTCTGCAATTCTAATATACGTGGATATGGTGGGGTTAGACAAGGGCTCCCAGGCAATGTAAATACTATGTACCACGACGGCGGGAACAGATTTGTTTGTAGAGGGTCTACTACTAATCTGGCCAATCAGTCTGGCAACCCTACAGTAATACAGGATTGGTATAATATAACTCCTACTAAGGTTATTTGGTATGTTCTTAATTTAAGGTACTCGAATGGTGGTATGAGTATTTCCGGCAACCCCTTTACTGGTTCTGATATTCTTATATCTCCTTCTAATTTCATAATTAAAGGGGTGAGTCTCCCTAATACCGGGTATAAGTTTATTAACCAGAATGCTTTTGGTAACTTAGGCTATAGGCCAGATATGGAATTCATCGGAAATAACGCAGCGTATACTGGAGTTTTTGGTGATACCACGGCAAGATGTGAACTTGTAGGGTCTAGTAATGGAGGATTGTGGTCTCCTGTAGATTATGGAGGAGCTAAATCACAGATTAGCATTTATAAGTTCGGAGTAGGTAAACAGTGGTATGTAAACTCTAACGATAATACTATTGGTAATGAGCATGGAGTTGTTTGGGGACCCTCAGCAGTTCCACTACGACTTTTTGGTGGAAATGTGGGTAGTTCTTATATGGGAGATGATATTACTCCTTACTATCCCGGAACTGGCGACAGGTATGTTGGTTTATCAACTATTGGGTTAGGTATCCCTGGCGGTAATGCTACAGTTATTCTTACTACTGAAGTTATATCCGGTAACCTTAACTGTGCAGGTGTTCCTGCTAATACATGGAATGATAGGGTGTTTCAAGTACAAGGAAGAAAAGCGCATAGTTATGGTAATGGAGATGCAATATTCCACCAGATTCTAACGCTACCTGTGGGCTACCTAGTACCTTTTCATACTACAGCAGCTTTTAGATACACCCCTAATAATGCTCTAAGCAGGAATAGTTTTATATACACCGTTAAAAACCTGGGAAATGGAAATGTAGAGCTAGGGGTAGTTATGCACGTGAGTTTAGGTAGTGCAGTTTTCCTGCCTAGACTAAGAGTAACAGTTCAACGCCTTACCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
fcb90424d47c0ad02d8dcab2c3553de152c0eb6a8e92bbc3f895231861ce819f
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,2406
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genetic Characterization of ShigActive phages Das,C.R., Woolston,J., Li,M., Sulakvelidze,A. and Soffer,N. 2013-11-08 — GenBank