Protein

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Genbank accession
ANZ50089.1 [GenBank]
Protein name
putative YomR
RBP type
TSP
Evidence RBPdetect
Probability 0,51
Protein sequence
MASTNVAKFTGTLLTTTYPNKYNVVIPPEGPFFRTGLELKNSAGVKLIEGLDYYLGYYYKEAAVAMKDQIYGGIMLINGDTSVDYTIYSIGREYRVPQTEIGKFLVKEDIKDPRNTDWSELMRYAPVVPAIDPPANLDEALLRDEVVKALDDIRQGLIKRAGDMDVAYAEVTDLIFANGKKIFDDNLYSHHRIKNAHQYTADEIGALKVLTKAVDSTKAFGKTLDELVAIMKANGIQQAHIDTLMPVVLGELRGRLKVLNNGALTFRTADSSHVITLQGDKFLITTTRAINITADADSNERGVGVELGSGLNTAYVLNGAVAPIFNGAYLVTPDMVSLYLSEVKLLPGNAYFSPTDTIKVFGTAKQSSPLTMNAQLPTATDKVPGLFAITNLSANISSGTAISQYAVNVLKKTLDDYVDNTYTINGKKFIDDGTKQSLTLTSADLGVGNINNTAPAEKPLTNAIRAVLANKALENHTHTFADLTGVPTASDTDAGLLQLWDAIDTTTNKVVTSKQGYNVQQRLNTYKDVLDGLLPSWTTGGASYGNSGFLPIPTVGNFAGFAKQLSWKGLGAVKQEGDIVYLLRNANDGLPNTDRIYYGYARVNNDGSIVGEQQTSFPYHPAGMSKYPGVRLLTLVASGDAALVCLGSDGYFYTVMLEGTLNYTKHKQVYRSEFPASFDANGTVSGYLGDQTREQTIVYKGKVYILHLELTNTQYSVYALVGSVSGDKMVYTPAALKGGNSVNGISVLLRANTDTDATDPATQGTTYVTEAGKVRWGNLRNIAHNIATYAVAQRENMTRVGILSTLLLLSPDDSYGRFTWATSFQIDMDTLTVSLDNADIFPFKIDADDVYLATGTKLKEAGWKVRFPYGNADNRMRVFQGVGQRAWSIYDQSQDTLPNGLAHSTMDADFYDFIAGDHKSGYTSLANWQFTGGIGSVYSVGQSHPVYLGNNAYLFSPANANSAVYVEVDPNTTYGPAYLGAGPSNVRRNFPVDDYYALADMTWCATSTLQSGKLNGAYWNGPGVKRYQAVGAVPKADTLTLSSDTWNKITAALKAAAPAGEVADSIANPINLLFSVWAIRPLDANPIWIAQMSYYALYNGNKRLGNVTFQIYPSVVNGVVQLVTTTADVVYTNIATYSNLQLIQNTNYSGHSSRMGQPIFYEKGDGTGIMHLPNFMIRQVVGSSAAYHLELIFSLNGGKLSATKAGVHGSTFYNYATILSFVGERMLRSNGQVISPSYFAGPSAPPNDFVAAGVTNYTPAGNVAIVAGVKTAEGWELYITESESLRFGSDYYTLDAYNGNIKTLFPGAYQNRTFYMHAAVVNGKPEYQLLTQKMPDTDTRLFIGTVVTDSQRILSSEFTKVKRLGELKQLTEHTDTVYSHDVNVDSEARLSRLGLLRKQPLSAPAATGDGYLDVSQIGPVFASQNHKVPIELLRDVVASTLPKDYKKFTMKGANFGQASDVDNGYLVGIPGMSAVISIAWKMIVEITPSTPTVKIKLTSGYSLGSGTIGCTNANLDVSATFSSTLAEATLAAEVGVKNTFVFNGITGGQATAFAAFSVSNVDNGTATVFYISDAATVAIRATTNVQGAAGRITGGVLDVYKVAMPAGVSIDDYFPIVHGDVIFRQPIPMLIADNALYIGNGVNYYGGTVTPSKLTVNLMPKLP
Physico‐chemical
properties
protein length:1663 AA
molecular weight: 179559,61560 Da
isoelectric point:5,92350
aromaticity:0,09862
hydropathy:-0,09080

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
ANZ50089.1
1 1663
Domain Start End Length (AA) Confidence
N-terminal 1 275 275 0,9902
Central domain 276 492 218 0,2362
C-terminal 493 1663 1170 0,1943
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-275
Central
276-492
C-terminal
493-1663

Taxonomy

  Name Taxonomy ID Lineage
Phage Erwinia phage vB_EamM_Parshik
[NCBI] 		1883376 No lineage information
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
ANZ50089.1 [NCBI]
Genbank nucleotide accession
KX397371 [NCBI]
CDS location
range 143949 -> 148940
strand -
CDS
ATGGCGAGCACGAACGTAGCCAAATTTACCGGTACGCTACTGACGACCACATATCCGAACAAATACAATGTGGTCATCCCTCCTGAGGGGCCGTTCTTCCGTACCGGGCTTGAGCTGAAAAACAGCGCAGGCGTGAAGCTCATTGAGGGTCTGGATTACTACCTCGGCTACTATTATAAAGAAGCCGCTGTCGCAATGAAAGACCAAATCTACGGCGGGATTATGTTGATTAACGGAGACACCTCTGTTGACTACACGATCTATTCGATTGGTCGCGAATACCGCGTACCACAGACCGAGATTGGCAAGTTCTTGGTGAAAGAGGACATCAAAGACCCGCGTAACACCGACTGGTCTGAACTGATGCGTTATGCACCAGTGGTTCCTGCAATTGACCCACCTGCCAACTTAGATGAAGCCCTGCTCCGCGATGAAGTCGTGAAAGCGCTGGATGATATCCGTCAAGGTTTGATTAAGCGGGCAGGCGATATGGATGTGGCGTACGCCGAGGTCACCGATTTGATTTTTGCCAACGGTAAAAAGATTTTCGACGACAACCTGTACAGCCACCATCGTATCAAAAACGCACACCAATACACTGCGGATGAGATTGGGGCGTTAAAGGTACTGACCAAAGCGGTAGACTCGACGAAGGCATTCGGTAAAACGCTGGATGAGTTAGTCGCTATCATGAAAGCAAACGGCATACAGCAAGCTCACATCGATACCCTGATGCCTGTGGTGCTTGGTGAACTGCGTGGTCGCCTCAAGGTGCTGAATAACGGTGCGTTGACATTCCGTACCGCCGACTCGAGCCATGTTATCACCCTGCAAGGCGATAAGTTCCTTATTACCACCACCCGTGCTATCAACATCACTGCGGATGCGGACAGTAACGAACGGGGTGTGGGGGTTGAGTTGGGTTCGGGGCTGAACACGGCTTATGTGCTCAACGGCGCAGTGGCACCCATCTTTAACGGTGCATATCTGGTCACACCGGACATGGTCTCGTTGTACCTGTCCGAAGTAAAACTCTTACCGGGGAACGCTTACTTTTCTCCAACCGACACCATCAAGGTATTCGGTACAGCGAAGCAGTCTTCTCCACTGACCATGAACGCGCAACTGCCCACGGCAACTGACAAAGTACCGGGGCTGTTTGCTATCACCAACCTGTCTGCAAATATTTCTTCGGGTACCGCGATTTCGCAGTATGCTGTTAACGTCCTGAAAAAGACGCTGGATGATTACGTGGACAACACGTACACCATTAACGGGAAGAAGTTCATTGATGACGGTACGAAACAGTCCCTTACCTTAACGTCCGCCGATTTGGGTGTGGGTAACATCAACAACACCGCACCTGCTGAGAAACCGTTGACCAACGCCATTCGTGCGGTATTGGCAAATAAGGCTCTGGAAAACCACACGCACACGTTTGCCGACCTGACGGGCGTACCAACGGCGTCTGATACGGACGCAGGTCTGTTGCAACTGTGGGATGCGATTGATACCACCACGAACAAAGTGGTGACGTCAAAGCAGGGCTATAACGTACAACAGCGCCTTAATACGTACAAAGACGTGTTGGACGGTCTGTTGCCGTCGTGGACGACTGGGGGTGCCTCGTACGGTAACAGTGGGTTCCTGCCTATTCCAACGGTGGGGAATTTTGCCGGTTTTGCGAAACAGCTAAGCTGGAAAGGGTTGGGGGCAGTCAAGCAGGAAGGGGACATCGTTTACCTGTTACGCAATGCAAACGACGGATTGCCGAACACTGATCGCATTTACTACGGCTATGCCCGTGTAAACAACGATGGGTCAATTGTAGGGGAGCAGCAGACGTCGTTCCCATACCACCCAGCGGGAATGAGTAAGTATCCCGGTGTCCGGCTACTCACACTGGTTGCGTCAGGCGATGCGGCGCTTGTCTGTTTAGGCAGCGACGGATATTTCTACACAGTCATGCTGGAAGGAACACTGAACTACACCAAACACAAACAGGTGTATCGGAGTGAATTCCCTGCCTCGTTCGACGCGAACGGCACGGTCAGCGGCTATCTCGGCGATCAGACACGCGAACAAACCATCGTGTATAAAGGGAAAGTCTACATTCTTCATCTGGAATTGACCAATACCCAGTACAGTGTCTATGCGTTAGTAGGGTCAGTCAGTGGGGACAAGATGGTTTACACCCCTGCTGCTCTCAAAGGGGGGAACAGCGTCAACGGTATCTCAGTGTTGCTGCGCGCTAACACAGACACCGATGCGACCGACCCTGCGACACAGGGCACCACCTATGTGACCGAGGCCGGTAAAGTACGCTGGGGTAACCTGCGCAACATCGCACACAACATCGCGACGTATGCGGTAGCGCAGCGCGAGAACATGACCAGGGTAGGTATTTTGAGCACCCTGTTATTGTTGAGCCCTGATGACTCGTATGGCCGTTTCACTTGGGCGACCTCGTTCCAGATTGACATGGATACGTTGACGGTCTCGCTGGATAATGCAGACATCTTCCCATTCAAAATCGATGCGGACGATGTGTATCTCGCCACTGGGACAAAGCTCAAAGAGGCAGGCTGGAAAGTTCGGTTCCCGTACGGCAATGCTGATAACCGCATGCGGGTGTTCCAAGGGGTTGGCCAACGCGCATGGTCTATTTACGATCAGTCTCAGGACACCCTCCCCAACGGGTTAGCACACTCGACAATGGACGCGGACTTCTACGACTTTATCGCAGGAGACCACAAAAGCGGTTACACCTCTCTGGCGAACTGGCAGTTCACGGGCGGTATTGGCTCGGTGTATTCTGTCGGTCAATCCCATCCGGTGTATCTGGGCAATAATGCGTATCTGTTTAGTCCCGCCAACGCCAACAGCGCGGTGTATGTCGAGGTAGACCCAAACACAACATACGGTCCCGCGTACTTGGGCGCAGGCCCGAGTAACGTGCGCCGCAATTTCCCGGTTGACGATTACTACGCTTTGGCAGACATGACGTGGTGTGCGACATCCACGCTCCAGTCGGGTAAGTTAAACGGCGCGTATTGGAACGGTCCCGGTGTGAAGCGGTACCAGGCCGTGGGTGCGGTACCAAAAGCCGATACCCTTACGTTGTCCTCCGACACATGGAACAAGATAACGGCGGCCTTAAAAGCGGCAGCACCGGCAGGTGAGGTGGCGGACAGCATTGCCAACCCGATTAACCTCCTCTTTTCCGTGTGGGCGATTCGACCCCTTGATGCCAATCCGATTTGGATTGCACAGATGTCGTACTACGCACTCTATAACGGCAATAAGCGGTTAGGGAATGTTACGTTCCAAATCTACCCGAGCGTCGTGAACGGGGTTGTTCAGCTGGTCACGACCACAGCTGACGTTGTATACACCAACATCGCGACGTACAGCAACCTGCAACTCATTCAGAATACCAACTATTCTGGGCACAGCAGCAGAATGGGCCAACCAATCTTCTACGAGAAAGGTGACGGAACGGGCATCATGCACTTGCCGAACTTCATGATTCGACAGGTCGTGGGGTCATCCGCGGCGTACCACCTTGAGCTGATTTTCAGTTTGAACGGAGGTAAGCTGTCGGCGACGAAGGCGGGGGTGCACGGCAGCACGTTTTACAACTATGCTACCATCCTTTCGTTTGTTGGGGAGCGAATGCTGCGGTCAAACGGGCAGGTGATTTCACCTTCTTATTTCGCAGGCCCAAGCGCACCACCGAACGACTTTGTTGCGGCAGGGGTGACAAACTACACCCCTGCGGGGAATGTTGCAATCGTTGCTGGGGTAAAAACCGCAGAAGGGTGGGAGCTGTACATCACCGAGTCTGAGAGCTTACGCTTTGGCTCCGACTATTACACGTTGGATGCGTATAACGGGAACATCAAAACGTTGTTCCCCGGTGCGTACCAAAACCGTACGTTCTACATGCATGCTGCGGTGGTGAACGGCAAACCGGAATACCAGCTGTTGACGCAGAAAATGCCCGATACAGATACCCGGTTGTTTATCGGGACGGTAGTCACCGACAGTCAGCGTATCTTGTCGTCTGAGTTCACGAAAGTGAAACGCTTGGGTGAATTGAAACAGTTGACGGAACACACCGACACGGTCTACAGCCACGATGTGAATGTGGACAGTGAAGCGCGCCTTTCTCGACTGGGGCTATTGCGTAAGCAACCCCTTTCTGCTCCGGCGGCTACCGGCGATGGGTATCTGGATGTGTCGCAAATCGGCCCGGTCTTCGCGTCACAAAACCACAAGGTTCCCATCGAGTTACTGCGGGATGTGGTGGCGAGCACCTTACCTAAAGACTACAAGAAGTTCACGATGAAGGGTGCCAACTTTGGTCAGGCTTCTGATGTAGATAATGGGTATTTGGTGGGTATTCCGGGGATGTCGGCTGTCATCTCGATTGCGTGGAAAATGATTGTGGAGATTACCCCGTCGACCCCGACGGTGAAAATCAAATTGACAAGCGGTTACTCTTTGGGCTCCGGCACCATCGGATGTACCAACGCCAACCTCGATGTTTCTGCAACGTTTTCTTCTACGCTGGCTGAGGCCACACTTGCTGCCGAGGTGGGGGTCAAAAACACATTCGTGTTTAATGGTATCACCGGGGGTCAAGCCACCGCGTTCGCTGCGTTTAGTGTCTCTAACGTGGATAACGGCACAGCGACGGTGTTCTATATCTCCGATGCTGCTACCGTGGCCATTCGTGCCACAACGAACGTACAGGGCGCAGCGGGGCGCATCACTGGTGGCGTACTTGATGTTTATAAAGTCGCCATGCCAGCAGGTGTTTCCATCGATGATTATTTCCCGATTGTTCATGGAGATGTCATCTTCCGCCAACCGATTCCCATGCTTATTGCCGACAACGCGTTGTACATCGGCAACGGGGTCAACTATTACGGCGGAACGGTCACCCCGTCAAAACTGACGGTCAATCTTATGCCTAAGTTGCCGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
39a62a2ea8d2be37e300bb2592016ba9159a87ccd66230219e26a317d7ac470b
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,6813
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50