Protein

View in Explore
Genbank accession
YP_009600813.1 [GenBank]
Protein name
hypothetical protein
RBP type
TF
Evidence RBPdetect
Probability 0,87
Protein sequence
MATIFAKDDLIVDATASLNGRVAEIGGSWVSVSGTSSGLGGTSGTMGVYLNQGARSTSTTSPGVIAYLSDPAPADDIVLSWKSGYFGTSGAPGVAFRVNGTSGYLLQLAQTFIVLYKTVAGSRKTVIQQTGLSPLSPTNAFHDYELHVKGGRLSLYKDGALFWEYEDADAPLLTAGNVGLFIRGDGRTTNFLAYVPDGEIVVGSPESAGSSEAAFAGEKFVAGSISSAGTTPTAYMQSATYRVGEMRNANGESNARFDAIALITAQMYALAQAPEPDFHSVGFSATTGAMDGAGTTVAAFVGRATMSGDMAGAGVTSDAMVSRAFGQGEGEFSIGSGGTSAAAFTAQRIVSARMQSEPKYDGDSFKFVGGRTIEASFLSEGSSTAGFTGYVAVRIEAAGSSTASFAPTDVTIPATFSAVGSSVGALKELEFAVTRFGQVGALGFGRMVGVSVTGGAMKSQGASIMSGWAGATIFSSEMGAEGSMRGRMVSLSFSSNIPTPDDRVSFLPAEDRTAVLEVEDREVLLPVEDREILLPAEDRIAYL
Physico‐chemical
properties
protein length:543 AA
molecular weight: 55859,69130 Da
isoelectric point:4,68958
aromaticity:0,08840
hydropathy:0,08748

Domains

Domains [InterPro]
G3DSA:2.60.120.560
RBD
18–191
G3DSA:2.60.120.560
G3DSA:2.60.120.560
RBD
18–195
G3DSA:2.60.120.560
YP_009600813.1
1 543
Architecture
RBD
RBD 18-195 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Sphingobium phage Lacusarx
[NCBI] 		1980139 Uroviricota > Caudoviricetes > Lacusarxvirus >
Host Sphingobium sp. IP1
[NCBI] 		2021637 Pseudomonadota > Alphaproteobacteria > Sphingomonadales > Sphingobiaceae > Sphingobium >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009600813.1 [NCBI]
Genbank nucleotide accession
NC_041927 [NCBI]
CDS location
range 71903 -> 73534
strand +
CDS
GTGGCAACAATCTTTGCCAAAGACGATCTGATTGTCGATGCCACCGCCAGCCTGAATGGGCGGGTGGCGGAGATCGGCGGATCATGGGTCTCTGTTTCTGGCACCAGCTCGGGGCTTGGCGGCACGAGCGGGACCATGGGCGTGTATCTGAATCAGGGCGCTCGCTCGACCTCTACCACTTCGCCCGGTGTAATCGCTTACTTGTCGGACCCGGCGCCTGCAGATGACATTGTTCTGTCTTGGAAGTCCGGCTACTTCGGCACTTCCGGCGCTCCGGGTGTGGCCTTCCGTGTCAATGGCACGTCAGGCTACCTACTGCAGCTCGCGCAGACTTTCATCGTCCTCTACAAGACTGTTGCCGGTTCGCGGAAGACGGTCATCCAGCAGACGGGATTGTCGCCTCTCAGTCCCACCAACGCTTTTCACGACTACGAATTGCATGTGAAGGGTGGCCGTCTCAGCCTTTATAAAGACGGCGCCCTTTTCTGGGAATATGAGGACGCAGACGCGCCACTTCTGACGGCGGGTAACGTCGGCCTCTTCATTCGCGGCGATGGTCGCACAACAAATTTCCTAGCCTACGTCCCGGACGGCGAAATTGTCGTCGGCTCCCCTGAATCGGCGGGCTCCTCGGAGGCCGCTTTCGCCGGTGAGAAGTTCGTAGCGGGGTCGATCAGCTCAGCAGGCACGACGCCGACCGCCTACATGCAGTCGGCGACCTACCGCGTCGGCGAGATGCGAAACGCTAACGGCGAGTCAAACGCTCGCTTCGACGCTATCGCTCTCATCACTGCCCAGATGTATGCGCTGGCGCAGGCTCCTGAGCCAGACTTCCATAGCGTCGGCTTCTCCGCCACGACCGGTGCCATGGATGGCGCAGGGACCACGGTAGCTGCGTTCGTTGGTCGGGCTACCATGTCGGGCGATATGGCTGGTGCTGGCGTTACCAGTGATGCTATGGTCTCTCGCGCTTTCGGACAGGGCGAGGGCGAGTTCTCGATCGGCAGCGGCGGCACCTCGGCGGCTGCGTTCACCGCTCAGCGGATCGTCAGCGCTCGGATGCAGTCGGAGCCAAAATACGACGGCGACTCCTTCAAGTTTGTCGGCGGGCGCACGATCGAGGCTTCGTTCCTTTCGGAAGGCTCCAGCACCGCAGGCTTCACCGGTTACGTCGCAGTGCGGATCGAGGCCGCTGGCTCCTCGACTGCCTCGTTCGCTCCCACTGATGTCACGATCCCGGCGACCTTCTCGGCTGTCGGTTCGTCAGTCGGCGCTCTCAAGGAGCTGGAGTTCGCGGTAACGCGCTTCGGGCAGGTAGGCGCCCTCGGCTTCGGTCGCATGGTGGGCGTATCTGTCACCGGCGGCGCCATGAAGTCGCAGGGTGCTTCGATCATGTCGGGCTGGGCAGGGGCGACGATCTTCTCTAGCGAGATGGGGGCGGAAGGCTCCATGCGTGGTCGCATGGTCTCGCTCTCGTTCAGCAGCAACATCCCCACACCGGACGATCGCGTCTCCTTCCTCCCGGCCGAGGATCGAACCGCTGTCCTTGAGGTCGAAGATCGGGAAGTGCTTCTCCCGGTTGAAGACCGCGAAATCCTCCTCCCGGCCGAAGATCGGATTGCATACCTATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
ab89ec15c7b4e0beda6e25ceae7f703bf2175670df3d9917b505e13e0c9fcf33
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,4723
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The first characterized phage against a member of the ecologically important #sphingomonads reveals high dissimilarity against all other known phages Nielsen,T.K., Carstens,A.B., Kot,W., Lametsch,R., Neve,H. and Hansen,L.H. — — GenBank