Protein

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Genbank accession
QQG32094.1 [GenBank]
Protein name
long tail fiber proximal hinge connector
RBP type
TSP
Evidence RBPdetect
Probability 0,91
Protein sequence
MEKMMASFGEGYTKTQVISENNSIKYKLSFAAGSEFSTPSSGYFTFQDELLGEQQDGAGINIREFNPATNTISSKKTFLLSATDGGGANTTFLEYLDSFTADNKNLLIFTTGSNLRSSDSIDAKFASYFSKLWPGKWLTSNYPCCYVGLYSPAERKMISENVNYSDGVLRDEDIRPALEYVYDKSNDIGATGYIHRAIDDYGEYVNSNATIKRYPVADASGVTLTSIGIKPGDILFWSFDFFHGTDLIPSGRNIRVSLRWLNASSGVVSTVNVDSSPSNAGNWIHHERNVVVPEGAVRVTILVSKTSGTDPVGEGGVRDMILTEVSRRLESFSTAASISVNGIRMNNAISGSDPTLLKLPALEVDASGKPLPGEDVSGNIYSSNWSEFEKNI
Physico‐chemical
properties
protein length:392 AA
molecular weight: 42693,96790 Da
isoelectric point:4,92825
aromaticity:0,10204
hydropathy:-0,27321

Domains

Domains [InterPro]
DC_0912
STR
1–392
DC_0912
PS52031
LEC
22–197
PS52031
QQG32094.1
1 392
Architecture
STR
STR 1-392
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QQG32094.1
1 392
Domain Start End Length (AA) Confidence
N-terminal 1 22 22 0,7997
Central domain 23 249 228 0,8132
C-terminal 250 392 142 0,2718
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-22
Central
23-249
C-terminal
250-392

Taxonomy

  Name Taxonomy ID Lineage
Phage Citrobacter phage CkP1
[NCBI] 		2799684 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Citrobacter koseri
[NCBI] 		545 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QQG32094.1 [NCBI]
Genbank nucleotide accession
MW239124 [NCBI]
CDS location
range 154594 -> 155772
strand +
CDS
ATGGAAAAAATGATGGCGAGTTTTGGTGAAGGATATACCAAAACACAAGTTATTTCTGAAAATAATTCCATCAAATATAAGTTGTCATTCGCAGCGGGGTCGGAATTTTCGACCCCTTCTTCAGGATATTTCACCTTTCAGGATGAGTTGTTAGGTGAACAGCAAGATGGTGCTGGTATTAATATTCGCGAATTTAACCCGGCAACGAATACAATTAGCTCAAAGAAAACATTTCTTTTATCTGCTACTGATGGCGGTGGAGCAAATACCACATTTTTAGAGTATCTAGATTCATTCACAGCAGATAACAAAAATTTGTTAATTTTTACTACTGGTTCTAATTTAAGATCAAGTGATTCTATTGATGCTAAATTTGCTTCTTATTTTTCAAAACTTTGGCCTGGAAAATGGTTAACTTCTAATTATCCTTGTTGTTATGTTGGATTATATTCTCCAGCAGAAAGAAAAATGATATCTGAAAACGTAAATTACTCTGATGGAGTTTTGCGCGATGAAGATATTCGTCCAGCTTTAGAATACGTTTATGATAAATCCAACGATATTGGAGCGACTGGCTATATTCATAGAGCTATAGATGATTATGGCGAATATGTTAATTCAAACGCCACAATAAAAAGATATCCTGTTGCTGACGCATCTGGAGTCACTTTGACTAGTATAGGAATTAAACCTGGAGATATTTTATTCTGGTCATTTGATTTCTTTCATGGAACAGATTTAATCCCGTCTGGAAGAAATATAAGAGTCAGTTTAAGATGGTTAAATGCTTCAAGCGGAGTTGTTTCTACTGTTAACGTCGATTCTAGTCCAAGTAATGCCGGAAATTGGATTCATCATGAACGAAATGTTGTAGTTCCAGAAGGCGCAGTAAGGGTAACTATATTAGTTTCAAAAACGAGTGGAACTGATCCAGTTGGAGAAGGTGGTGTTCGTGATATGATTTTAACTGAAGTTTCAAGACGATTAGAATCATTTTCTACTGCCGCTTCTATTTCTGTCAATGGCATTAGAATGAATAACGCCATATCAGGAAGCGACCCTACTTTACTTAAATTGCCAGCTCTGGAAGTTGATGCTTCTGGTAAACCTCTTCCGGGAGAAGATGTATCTGGAAACATTTATAGTTCAAATTGGAGCGAGTTTGAGAAAAATATATAG

Genome Context

Genome Context

Tertiary structure

PDB ID
076d01b9d202891575ab9cb3409229248ea47ee22d40bbfa38d7a6748cbafd9c
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6224
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
CkP1, a S16-like broad-host-range myovirus, recognizes Citrobacter koseri lipopolysaccharide through its long tail fibres Oliveira,H., Santos,S., Pires,D., Pinto,G., Carrera,J., Briers,Y., Schmelcher,M., Dotsch,A. and Azeredo,J. 2022 — GenBank