Protein

Genbank accession
YP_009882839.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
TF
Evidence Phold
Probability 1,00
Protein sequence
MNPQFSQPKGSVSKETNKDSIARKFGCKKSEVLYAKPGAVLTGYKVIYDKVTQRSYALPSNLPAGATITSLTDGILVHNTGTVDLGVLAVLRKEFVTLIENFDSGFTIRVRNEVVSDGTNLYRWGGTLPKSVNAGGTIANTGGLSSSNWVKLDPDALRDELYSGFYRLTVIDPSMSQSLIQTKLSQGGTFQFLPGNYTVTGQALAFYPNSEIYAHSGALFLAGENNVGVLTIDPSRSGGNAVRNCKLHNIRISLNGKTGCVAFRAKYWRNHGHLDMMWVDMGTAINNVGIEIGTLCYGLKIDGCEVIGGGAGSSRLIVQNGANAIVITGFDGYSGAPEVDMPDYGIIVRHSTDGGTSWDYTTTFPTEAVCFVNGFSQNTTKYGFLDQAKGTKVYGMYYENNSISDVRISGSQDATFRDCTHSSPSQGTLAHGYSITNSTNSLIDEPIWGTRAGGFFDIGGAQDAGVTGHIVNIARWGASRGIDDLGVVTACKLSRGKLPLQLTTDSVDINSGYGCYRRNVSSGSNIAFTGTPYDGMELTFLLRGSNIASLSIAGVPVDVTGANTATTKMNLVKMVYSKVTSTWVINAGQWNASA
Physico‐chemical
properties
protein length:594 AA
molecular weight: 63386,52690 Da
isoelectric point:7,96115
aromaticity:0,09091
hydropathy:-0,12138

Domains

Domains [InterPro]
G3DSA:3.30.2020.50
1–93
G3DSA:3.30.2020.50 G3DSA:2.10.10.80
IPR040775
96–151
IPR040775
YP_009882839.1
1 594
Legend: Pfam SMART CDD TIGRFAM HAMAP SUPFAM PRINTS Gene3D PANTHER Other

Taxonomy

  Name Taxonomy ID Lineage
Phage Shigella phage MK-13
[NCBI] 		2530042 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009882839.1 [NCBI]
Genbank nucleotide accession
NC_049455 [NCBI]
CDS location
range 76459 -> 78243
strand +
CDS
ATGAATCCGCAATTTTCACAGCCGAAAGGCTCTGTCTCCAAAGAGACAAACAAGGACTCCATTGCTCGCAAGTTTGGGTGCAAGAAGTCTGAGGTTCTCTATGCTAAACCAGGTGCTGTCCTGACAGGATACAAGGTGATCTACGATAAGGTCACTCAGCGCTCCTATGCACTGCCTTCTAACCTGCCCGCTGGCGCTACCATCACCAGCCTGACAGACGGCATTCTCGTGCACAATACGGGTACTGTCGATCTGGGTGTTCTCGCAGTGCTTCGGAAGGAATTTGTAACTTTGATCGAAAACTTCGACTCAGGGTTCACAATTCGTGTTAGAAATGAAGTCGTTTCTGATGGTACAAATCTTTACCGTTGGGGTGGGACTTTACCCAAATCTGTAAACGCTGGTGGCACCATTGCCAATACTGGTGGATTGTCAAGTTCTAACTGGGTGAAATTGGATCCAGATGCATTGAGAGATGAGTTATACTCTGGGTTTTATCGTCTAACTGTTATCGACCCTTCGATGTCTCAGTCTCTTATACAAACTAAATTATCCCAGGGTGGGACATTCCAGTTTCTTCCTGGCAACTATACGGTAACTGGCCAGGCGTTGGCGTTTTATCCTAACTCTGAAATTTATGCGCATTCCGGCGCTTTATTCTTGGCTGGCGAAAACAACGTTGGTGTACTCACGATTGACCCTTCTCGTTCTGGTGGAAATGCAGTGAGAAACTGCAAATTACACAATATCAGGATATCATTGAATGGTAAAACGGGTTGCGTCGCTTTCAGAGCCAAATATTGGAGGAACCATGGTCATCTAGATATGATGTGGGTAGACATGGGGACAGCCATTAATAACGTCGGGATAGAGATAGGGACTTTGTGTTATGGATTGAAGATAGACGGTTGTGAGGTTATCGGTGGTGGGGCTGGTTCGAGTCGGTTAATAGTACAGAACGGAGCCAATGCTATCGTTATAACAGGATTTGATGGTTATTCCGGTGCTCCGGAAGTGGATATGCCGGATTATGGTATTATCGTAAGACACTCTACCGACGGCGGGACTTCTTGGGATTATACCACAACATTCCCCACAGAAGCAGTCTGTTTTGTTAACGGATTCAGCCAGAATACCACGAAGTATGGTTTCTTGGATCAGGCCAAGGGAACTAAGGTGTATGGAATGTATTATGAGAACAATAGTATCTCTGATGTCCGCATCAGTGGTTCTCAAGATGCCACATTCCGAGATTGTACACACTCTTCCCCAAGCCAAGGAACCCTCGCGCATGGGTATAGTATAACCAACTCCACCAACAGCTTAATTGATGAGCCGATATGGGGAACAAGGGCTGGAGGTTTCTTCGACATTGGTGGTGCACAAGACGCCGGTGTGACTGGCCACATAGTCAACATCGCACGTTGGGGCGCAAGTCGAGGCATTGATGATCTCGGCGTTGTAACGGCATGTAAATTAAGTCGTGGAAAATTGCCATTACAGCTCACAACTGACTCTGTCGACATAAACAGCGGTTATGGGTGCTATCGAAGAAACGTTTCTTCTGGTTCCAACATCGCATTTACTGGTACGCCATATGATGGTATGGAGCTGACGTTTTTACTGAGAGGTTCAAACATTGCTTCATTGAGCATAGCGGGTGTCCCTGTCGATGTGACTGGTGCCAACACCGCCACCACGAAAATGAATCTCGTGAAAATGGTGTATTCAAAAGTAACGAGCACATGGGTGATCAATGCTGGTCAATGGAATGCTTCCGCTTGA

Gene Ontology

No Gene Ontology terms available.

Enzymatic activity

No enzymatic activity data available.

Tertiary structure

PDB ID
5a5e404575878d11be5c50917c6944ab0298c405a488d7f6689a46ad9ab9e132
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7717
Evidence 0,7717
Download PDB

Literature

Title Authors Date PMID Source
Prevalence of Shigella boydii in Bangladesh: Isolation and characterization of a rare phage that can robustly identify Shigella boydii type 1 Akter,M., Brown,N., Clokie,M., Yeasmin,M., Tareq,T., Baddam,R., Azad,M.A.K., Ghosh,A.N., Ahmed,N. and Talukder,K.A. 2019-11-07 — GenBank