Protein

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Genbank accession
YP_009882839.1 [GenBank]
Protein name
tail spike protein
RBP type
TSP
Evidence UniProt/TrEMBL
Probability 1,00
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MNPQFSQPKGSVSKETNKDSIARKFGCKKSEVLYAKPGAVLTGYKVIYDKVTQRSYALPSNLPAGATITSLTDGILVHNTGTVDLGVLAVLRKEFVTLIENFDSGFTIRVRNEVVSDGTNLYRWGGTLPKSVNAGGTIANTGGLSSSNWVKLDPDALRDELYSGFYRLTVIDPSMSQSLIQTKLSQGGTFQFLPGNYTVTGQALAFYPNSEIYAHSGALFLAGENNVGVLTIDPSRSGGNAVRNCKLHNIRISLNGKTGCVAFRAKYWRNHGHLDMMWVDMGTAINNVGIEIGTLCYGLKIDGCEVIGGGAGSSRLIVQNGANAIVITGFDGYSGAPEVDMPDYGIIVRHSTDGGTSWDYTTTFPTEAVCFVNGFSQNTTKYGFLDQAKGTKVYGMYYENNSISDVRISGSQDATFRDCTHSSPSQGTLAHGYSITNSTNSLIDEPIWGTRAGGFFDIGGAQDAGVTGHIVNIARWGASRGIDDLGVVTACKLSRGKLPLQLTTDSVDINSGYGCYRRNVSSGSNIAFTGTPYDGMELTFLLRGSNIASLSIAGVPVDVTGANTATTKMNLVKMVYSKVTSTWVINAGQWNASA
Physico‐chemical
properties
protein length:594 AA
molecular weight: 63386,52690 Da
isoelectric point:7,96115
aromaticity:0,09091
hydropathy:-0,12138

Domains

Domains [InterPro]
G3DSA:3.30.2020.50
ATT
1–93
G3DSA:3.30.2020.50 G3DSA:2.10.10.80 DC_1700
G3DSA:3.30.2020.50
ATT
1–100
G3DSA:3.30.2020.50 G3DSA:2.10.10.80
IPR040775
RBD
96–151
IPR040775
YP_009882839.1
1 594
Architecture
ATT
STR
ATT 1-164 | STR 165-594
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009882839.1
1 594
Domain Start End Length (AA) Confidence
N-terminal 1 178 178 0,9931
Central domain 179 494 317 0,9881
C-terminal 495 594 99 0,9852
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-178
Central
179-494
C-terminal
495-594

Taxonomy

  Name Taxonomy ID Lineage
Phage Shigella phage MK-13
[NCBI] 		2530042 Uroviricota > Caudoviricetes > Pantevenvirales > Aglimvirinae > Agtrevirus
Host Shigella boydii
[NCBI] 		621 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009882839.1 [NCBI]
Genbank nucleotide accession
NC_049455.1 [NCBI]
CDS location
range 76459 -> 78243
strand +
CDS
ATGAATCCGCAATTTTCACAGCCGAAAGGCTCTGTCTCCAAAGAGACAAACAAGGACTCCATTGCTCGCAAGTTTGGGTGCAAGAAGTCTGAGGTTCTCTATGCTAAACCAGGTGCTGTCCTGACAGGATACAAGGTGATCTACGATAAGGTCACTCAGCGCTCCTATGCACTGCCTTCTAACCTGCCCGCTGGCGCTACCATCACCAGCCTGACAGACGGCATTCTCGTGCACAATACGGGTACTGTCGATCTGGGTGTTCTCGCAGTGCTTCGGAAGGAATTTGTAACTTTGATCGAAAACTTCGACTCAGGGTTCACAATTCGTGTTAGAAATGAAGTCGTTTCTGATGGTACAAATCTTTACCGTTGGGGTGGGACTTTACCCAAATCTGTAAACGCTGGTGGCACCATTGCCAATACTGGTGGATTGTCAAGTTCTAACTGGGTGAAATTGGATCCAGATGCATTGAGAGATGAGTTATACTCTGGGTTTTATCGTCTAACTGTTATCGACCCTTCGATGTCTCAGTCTCTTATACAAACTAAATTATCCCAGGGTGGGACATTCCAGTTTCTTCCTGGCAACTATACGGTAACTGGCCAGGCGTTGGCGTTTTATCCTAACTCTGAAATTTATGCGCATTCCGGCGCTTTATTCTTGGCTGGCGAAAACAACGTTGGTGTACTCACGATTGACCCTTCTCGTTCTGGTGGAAATGCAGTGAGAAACTGCAAATTACACAATATCAGGATATCATTGAATGGTAAAACGGGTTGCGTCGCTTTCAGAGCCAAATATTGGAGGAACCATGGTCATCTAGATATGATGTGGGTAGACATGGGGACAGCCATTAATAACGTCGGGATAGAGATAGGGACTTTGTGTTATGGATTGAAGATAGACGGTTGTGAGGTTATCGGTGGTGGGGCTGGTTCGAGTCGGTTAATAGTACAGAACGGAGCCAATGCTATCGTTATAACAGGATTTGATGGTTATTCCGGTGCTCCGGAAGTGGATATGCCGGATTATGGTATTATCGTAAGACACTCTACCGACGGCGGGACTTCTTGGGATTATACCACAACATTCCCCACAGAAGCAGTCTGTTTTGTTAACGGATTCAGCCAGAATACCACGAAGTATGGTTTCTTGGATCAGGCCAAGGGAACTAAGGTGTATGGAATGTATTATGAGAACAATAGTATCTCTGATGTCCGCATCAGTGGTTCTCAAGATGCCACATTCCGAGATTGTACACACTCTTCCCCAAGCCAAGGAACCCTCGCGCATGGGTATAGTATAACCAACTCCACCAACAGCTTAATTGATGAGCCGATATGGGGAACAAGGGCTGGAGGTTTCTTCGACATTGGTGGTGCACAAGACGCCGGTGTGACTGGCCACATAGTCAACATCGCACGTTGGGGCGCAAGTCGAGGCATTGATGATCTCGGCGTTGTAACGGCATGTAAATTAAGTCGTGGAAAATTGCCATTACAGCTCACAACTGACTCTGTCGACATAAACAGCGGTTATGGGTGCTATCGAAGAAACGTTTCTTCTGGTTCCAACATCGCATTTACTGGTACGCCATATGATGGTATGGAGCTGACGTTTTTACTGAGAGGTTCAAACATTGCTTCATTGAGCATAGCGGGTGTCCCTGTCGATGTGACTGGTGCCAACACCGCCACCACGAAAATGAATCTCGTGAAAATGGTGTATTCAAAAGTAACGAGCACATGGGTGATCAATGCTGGTCAATGGAATGCTTCCGCTTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
5a5e404575878d11be5c50917c6944ab0298c405a488d7f6689a46ad9ab9e132
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7717
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Prevalence of Shigella boydii in Bangladesh: Isolation and characterization of a rare phage that can robustly identify Shigella boydii type 1 Akter,M., Brown,N., Clokie,M., Yeasmin,M., Tareq,T., Baddam,R., Azad,M.A.K., Ghosh,A.N., Ahmed,N. and Talukder,K.A. 2019-11-07 — GenBank