Protein

View in Explore
Genbank accession
XYY22333.1 [GenBank]
Protein name
regulator of chromosome condensation RCC1 domain-containing protein
RBP type
TF
Evidence RBPdetect
Probability 0,90
TF
Evidence RBPdetect2
Probability 0,87
Protein sequence
MADYLATYETPGTGAVMQVEVNFAGQRPDLPNDPAPYLDPANVKAMIVTEATSTTVEVVRDITITLVNSTTFRTDEIVPLGTILRVYRITDIEFPIVDFVSLQVVSEADLDLQARQTLYAVMESRDAATRAQVYANFAQSVSVEANASAKDAVEKAEAAVRTADAAALAATNAVQVANQANTKSDEALAAAEAAEEHATNVETLAQSAQEAAAAAQQEATDARLAAENAVNIANGVDGKADAALEAAQRADTNAAQALSVANGISATAEAARVTANEAKDAATNAVAVAGAVDAKAQTALDTASAANVSAQNAVIIAQAAVTSATNANGGVTAANTRIDVLADRVLALENWRNTASVVIANNSAGVTSLSNRATALEQAVNAINAAAVTDKPTLPASCMVNGLFVLHKGVLYAAVGANTNCANVAQGRVPNGQVGMLGMPFMSPVPVPSALPVVQAGGFGENFFALDSAGNLFTWGMNEQGQCGLGHNSAVTNPTLAATGVLNVYTTPSTSCVYRNLSRLFIQKSDGIYGAGRNTYGQLGDGTTTARNTFVLVFTAPPSSIVGVWNLGTEFGCTFLRTTTGVWCWGYNGYGQLGTGDTVSKLVPTDVTAAWRYGASDLPVDFTGGFGYSSDTAHSESTVVARTAGGVIRACGNGSYGMLGNGSNANISTPSAPATPTFIDMVVVGGGPGAVFALTASGDVWCWGYNSNGMLSDGTVVQKNVPAKHPTLSGVDKILSRGIDSPAYSYNANAFFRMRAVDGVQAVMSVGVEGTASRGDGQTTAARRNATRVLFPFRDGATGEALRVEALSTSMTTWGATGAFAHIVVDSRGNLWGWGYNGQNMLGASPSAYEWAPIKFQSPWTRGEL
Physico‐chemical
properties
protein length:865 AA
molecular weight: 89255,37870 Da
isoelectric point:4,76819
aromaticity:0,06936
hydropathy:0,03931

Domains

Domains [InterPro]
DC_0245
STR
1–216
DC_0245 IPR009091 IPR009091
IPR005604
ATT
34–130
IPR005604 Coil Coil IPR009091
IPR051553
Unmapped
178–609
IPR051553 IPR000408 IPR000408 IPR000408
IPR000408
STR
470–496
IPR000408 IPR000408 IPR000408 IPR000408
IPR000408
STR
471–487
IPR000408
XYY22333.1
1 865
Architecture
STR
ATT
STR
STR
STR 1-33 | ATT 34-130 | STR 131-216 | STR 353-863 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage Ppr_SeaP2
[NCBI] 		3446275 Viruses >
Host Pseudomonas protegens Pf-5
[NCBI] 		220664 Pseudomonadota > Gammaproteobacteria > Pseudomonadales > Pseudomonadaceae > Pseudomonas > Pseudomonas protegens

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XYY22333.1 [NCBI]
Genbank nucleotide accession
PV763894 [NCBI]
CDS location
range 14859 -> 17456
strand +
CDS
ATGGCTGATTATCTCGCCACGTATGAAACACCCGGCACCGGGGCAGTGATGCAGGTGGAGGTAAACTTCGCCGGTCAACGACCAGATTTGCCGAACGACCCGGCTCCGTACCTTGACCCTGCAAACGTCAAGGCCATGATCGTGACCGAAGCCACCTCCACCACCGTGGAAGTTGTGCGCGACATCACCATCACCCTCGTTAACTCTACGACTTTCCGCACCGACGAGATCGTGCCACTGGGCACCATCCTCCGCGTGTACCGCATCACCGACATCGAATTCCCTATCGTGGACTTCGTGTCTCTGCAAGTAGTGTCTGAGGCCGACCTCGACCTGCAAGCACGCCAGACGCTGTATGCTGTCATGGAATCCCGTGACGCCGCAACCCGCGCTCAGGTTTACGCCAACTTCGCACAGTCCGTATCCGTTGAGGCCAATGCCTCGGCAAAGGACGCCGTGGAGAAAGCTGAGGCCGCTGTCCGCACTGCTGACGCCGCCGCTCTTGCCGCCACCAACGCTGTGCAGGTAGCGAACCAAGCCAACACCAAGTCCGACGAAGCGCTGGCCGCTGCTGAGGCTGCTGAGGAACACGCTACCAACGTTGAGACGCTGGCACAATCCGCACAGGAAGCTGCTGCTGCCGCCCAACAGGAAGCAACCGACGCACGACTCGCTGCTGAGAACGCTGTGAACATCGCCAACGGTGTTGACGGCAAGGCTGACGCTGCGCTGGAAGCCGCACAACGTGCTGACACCAACGCTGCACAAGCCCTATCCGTTGCAAACGGTATCTCTGCAACCGCAGAAGCCGCACGGGTAACTGCCAATGAGGCCAAGGACGCTGCAACCAACGCAGTGGCTGTAGCCGGAGCAGTTGACGCAAAGGCACAGACCGCTCTGGACACTGCCAGCGCAGCTAACGTCTCGGCGCAGAACGCTGTTATCATCGCACAGGCTGCTGTTACTTCGGCAACCAATGCGAACGGTGGTGTTACTGCTGCAAACACCCGCATTGACGTACTCGCGGATCGAGTGCTGGCCCTTGAAAACTGGCGCAACACTGCGTCTGTAGTGATCGCCAACAACTCCGCTGGTGTGACCTCACTGAGTAACAGGGCCACGGCTCTTGAGCAAGCTGTTAACGCGATCAACGCCGCTGCGGTTACTGACAAGCCTACTCTGCCAGCATCCTGCATGGTTAACGGACTGTTCGTTCTGCATAAAGGCGTCCTGTACGCCGCAGTAGGTGCGAACACCAACTGTGCCAACGTGGCTCAGGGCCGTGTTCCGAACGGTCAGGTGGGTATGCTGGGCATGCCTTTCATGAGCCCAGTACCTGTTCCATCCGCTCTCCCGGTTGTTCAGGCTGGCGGGTTCGGCGAGAACTTCTTCGCCTTGGACTCTGCGGGTAACCTGTTCACTTGGGGCATGAACGAGCAAGGACAGTGTGGTCTAGGTCACAACTCGGCAGTTACCAACCCAACGTTGGCTGCTACAGGTGTGCTGAACGTGTACACCACACCTAGCACATCCTGTGTGTACCGCAACCTGTCCCGCCTGTTCATTCAAAAGAGCGACGGGATCTACGGTGCGGGTCGAAACACTTACGGACAACTAGGCGACGGCACGACTACTGCCCGGAACACGTTCGTGCTTGTATTCACTGCGCCACCGTCCAGTATCGTCGGTGTGTGGAACTTGGGAACCGAGTTCGGTTGTACGTTCTTGAGAACTACAACTGGCGTATGGTGCTGGGGCTACAACGGCTACGGGCAGTTGGGCACTGGCGACACTGTTAGTAAGTTGGTTCCCACAGACGTAACCGCAGCGTGGCGCTACGGGGCTTCTGACCTTCCGGTGGACTTCACTGGAGGGTTCGGGTATTCCTCGGACACTGCGCACAGCGAGTCCACTGTGGTAGCTCGTACCGCTGGCGGCGTGATCCGTGCTTGCGGCAATGGAAGCTACGGAATGCTGGGTAACGGAAGCAACGCCAACATCAGCACGCCGTCTGCTCCAGCCACACCTACGTTTATCGACATGGTTGTAGTTGGCGGCGGTCCCGGCGCAGTGTTCGCGCTCACCGCTTCCGGTGACGTGTGGTGCTGGGGATACAACTCCAACGGTATGTTGTCTGACGGTACTGTGGTGCAGAAGAACGTCCCTGCCAAACATCCGACACTCTCTGGTGTTGACAAGATCCTGTCCCGTGGCATCGACAGCCCGGCGTACAGCTACAACGCAAACGCATTCTTCCGTATGCGTGCCGTTGACGGCGTGCAGGCTGTCATGTCTGTCGGGGTAGAGGGCACTGCCAGTCGGGGTGATGGTCAGACGACCGCAGCACGCCGCAACGCAACTCGTGTACTGTTCCCGTTCCGTGATGGGGCTACAGGCGAGGCGTTACGAGTTGAAGCGTTGTCTACGTCCATGACTACTTGGGGCGCTACCGGTGCCTTTGCGCACATCGTGGTTGACTCTCGCGGCAACCTGTGGGGCTGGGGCTACAACGGGCAGAACATGCTCGGAGCCAGCCCAAGCGCGTATGAGTGGGCGCCTATCAAGTTCCAATCTCCTTGGACACGAGGTGAGCTGTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
7049bc1d2e5c12936ce04107a5c0bcd4f17ea3f83f4b89eaebf0f697274d827f
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,7568
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Pseudomonads coordinate innate defense against viruses and bacteria with a single regulatory system Brinkley,D.M., Bertolli,S.K., Gallagher,L.A., Tan,Y., Motha de Silva,M., Brockman,A., Zhang,D., Peterson,S.B. and Mougous,J.D. — — GenBank