Protein

View in Explore
Genbank accession
AZS06263.1 [GenBank]
Protein name
putative tail fiber protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,96
Protein sequence
MTAGTIALTNGSKNVTGTGTAFTTDTAAADFIIVTVGGTTYSLAVDSVTDDTHLKLVVEFDGPTQTGVAWTNVPYGAQMRLSQQMGNDMSRLMRFYLTDKSNWQKILTGPGEVTIKFPDGSEETGLSWPALIAAVGDAYQMKGEIAAGVDLNTLGPDSEGIWHQSVVVNATTALHYPEAAGGTLEILPHRQGAMQRYTSQNGVSYIRTPGDQWNGTDGPWGPWMVQFGKNRLPSTQEVSANNGLPNELPTTLNVFTRATYQAETWLKGDGSNESAALQAAINAVPDGAVLLFPPKQYIVSGVNITKGITLLGQGYLQAGTQFVNPTAAADTLYAKDQNNIEISSIHFRANPKRTGGQFLHFETCHRVFLNRNFFWEYFRAVEFDGGTEINVYWNEGFTTTFGADSGFIALGRTYYTGSIMFSGNYLKVDDSTGANMPDYGIKFGFIDVAYVDGTNTLIRHGADVFICPNGQDQFAHLIKLDGACLDTARNGVKVAPTNGANAELEMSACYSAAMTDVAWLFDSTGGKVTCTITGGEVFNCGVYGIDVRGNNARIIINGVRFSNNGLDIHADASTSQIYASGNYHSDLDDKSASQRPWAIGAGVIGFIRDPMLGAVANPGTNGSAAFTIEGVWSDFAPSITPISGAFGGAVSAVTARYRVDGYRVEGQITCVIPHNTDTNGVRITLPYAARTHVVGHGRNDSNGRMLQCIGTPGDQAAVVFAYDNAHPVAAAGNNTMIIHFSYERVA
Physico‐chemical
properties
protein length:746 AA
molecular weight: 79776,07100 Da
isoelectric point:5,15947
aromaticity:0,09920
hydropathy:-0,13391

Domains

Domains [InterPro]
DC_0162
STR
1–594
DC_0162
cd19958
STR
142–223
cd19958 IPR012334
IPR011050
STR
268–445
IPR011050
AZS06263.1
1 746
Architecture
STR
STR 1-594 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AZS06263.1
1 746
Domain Start End Length (AA) Confidence
N-terminal 1 271 271 0,9914
Central domain 272 628 358 0,9926
C-terminal 629 746 117 0,9926
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-271
Central
272-628
C-terminal
629-746

Taxonomy

  Name Taxonomy ID Lineage
Phage Pantoea phage vB_PagS_MED16
[NCBI] 		2499074 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Pantoea agglomerans
[NCBI] 		549 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AZS06263.1 [NCBI]
Genbank nucleotide accession
MK095605 [NCBI]
CDS location
range 20106 -> 22346
strand +
CDS
ATGACAGCAGGAACCATTGCTCTAACGAACGGCAGCAAGAATGTAACCGGCACCGGGACAGCGTTCACTACAGACACAGCGGCGGCTGATTTCATCATCGTCACCGTTGGCGGTACCACCTATTCCCTGGCGGTTGATTCTGTCACTGATGACACTCACCTGAAGCTGGTGGTGGAATTTGATGGCCCAACCCAGACCGGAGTGGCGTGGACCAATGTCCCATACGGTGCACAGATGCGACTGTCCCAGCAAATGGGCAATGACATGTCGCGCCTGATGCGCTTCTACCTGACCGACAAAAGCAACTGGCAAAAAATCCTGACCGGCCCCGGAGAAGTGACCATTAAATTCCCGGATGGATCGGAAGAAACCGGACTGTCATGGCCTGCACTTATCGCCGCTGTCGGTGATGCTTACCAGATGAAAGGCGAGATTGCTGCCGGTGTTGACCTGAATACCCTTGGGCCTGACAGTGAGGGCATCTGGCATCAGTCGGTGGTGGTTAATGCGACCACGGCTTTACATTATCCGGAAGCCGCTGGCGGCACGCTGGAGATCCTGCCGCATCGTCAGGGTGCCATGCAGCGCTATACGTCTCAGAATGGCGTGTCTTATATCAGAACCCCAGGCGACCAGTGGAATGGAACGGATGGCCCGTGGGGTCCGTGGATGGTTCAGTTCGGCAAAAACCGCCTGCCGTCTACTCAGGAGGTCAGCGCTAACAATGGCCTGCCTAATGAACTCCCGACCACGCTTAACGTGTTTACCCGCGCGACCTATCAGGCTGAGACATGGCTCAAGGGTGATGGCAGCAATGAGTCAGCGGCGTTACAGGCTGCGATCAATGCCGTGCCGGATGGCGCTGTCCTGTTATTCCCGCCAAAGCAGTACATTGTCAGCGGCGTGAATATCACAAAAGGCATCACGCTGCTTGGTCAGGGTTATCTTCAGGCCGGGACTCAGTTCGTTAACCCGACTGCCGCCGCTGATACGCTGTATGCGAAAGACCAGAACAATATTGAAATCTCCAGCATTCACTTCCGTGCAAATCCAAAACGAACTGGCGGCCAGTTCCTGCACTTTGAAACGTGTCACCGCGTCTTCCTGAACCGTAATTTCTTCTGGGAATACTTCCGCGCGGTTGAGTTCGATGGCGGAACAGAAATCAACGTTTACTGGAACGAAGGGTTTACAACCACTTTCGGCGCTGACTCTGGATTTATCGCACTGGGTCGAACCTACTACACCGGCAGCATCATGTTCTCAGGGAACTACCTGAAGGTTGATGACAGCACCGGCGCGAACATGCCTGACTACGGCATCAAGTTCGGCTTTATTGACGTTGCCTATGTGGACGGCACGAACACCCTGATCCGCCATGGCGCTGATGTGTTCATCTGCCCGAACGGACAGGACCAGTTTGCTCACCTGATTAAGCTTGATGGTGCCTGCCTGGACACTGCGCGCAATGGCGTGAAAGTCGCTCCGACCAATGGCGCGAACGCAGAGCTGGAGATGTCAGCCTGTTACTCTGCAGCCATGACGGATGTTGCCTGGCTCTTTGATTCAACTGGCGGCAAGGTGACGTGTACTATCACGGGCGGCGAAGTATTCAACTGTGGCGTGTACGGGATCGACGTGCGTGGGAACAATGCGCGAATCATCATCAACGGCGTGCGATTCTCAAACAACGGCCTAGACATTCACGCGGATGCGTCAACGTCGCAGATCTATGCCTCTGGCAACTACCATAGCGATCTGGACGATAAGTCAGCCTCGCAGCGTCCATGGGCAATTGGTGCGGGTGTCATCGGCTTCATCCGCGACCCGATGCTGGGCGCAGTGGCTAACCCAGGCACCAACGGATCAGCAGCGTTCACCATTGAGGGGGTCTGGTCTGACTTTGCACCATCCATTACGCCAATCTCTGGCGCTTTTGGCGGTGCTGTTTCGGCGGTTACTGCGCGCTACCGCGTTGACGGTTATCGTGTGGAAGGCCAGATCACCTGCGTGATCCCACACAACACCGACACTAATGGCGTGCGAATCACCCTGCCTTATGCAGCCAGAACCCACGTTGTAGGACATGGCCGCAATGACAGCAATGGCCGCATGTTGCAATGCATCGGCACACCAGGCGATCAGGCTGCTGTGGTGTTCGCTTATGACAATGCGCATCCTGTAGCTGCAGCAGGCAACAACACGATGATTATTCACTTCAGCTATGAGAGAGTCGCGTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
5062f1285afb67f826ab93991754fcf8c7453f37a1f34ea3defcb685bae6f635
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8779
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequence of Pantoea phage vB_PagS_MED16 Truncaite,L., Simoliuniene,M., Kazlauskas,D., Meskys,R. and Simoliunas,E. 2011-08-10 — GenBank