Protein

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Genbank accession
YP_010089170.1 [GenBank]
Protein name
tail fiber protein proximal subunit
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,51
TF
Evidence RBPdetect2
Probability 0,66
Protein sequence
MVAKSFRARSGLDAAGEKVINVGKADRNTLSDGVNVDFFNEFNGIQQYDPTRGYSQDMAIIYARRIWYAKQNIASPAGAFDESKWIATRNDPKWVYSNVTTPDGSIIDSGSYIMADGRFTELLYLLPDNPTEGDVITFKDCGGLVGVNSILVKSNTRQIRLRAVQSAQYRLTHPYMIATFIYNGNVWRVSEALDNRDSEIVNATGTGSFQLQSGMTVFRNSATGKITLQLPKYANDGDVITTYDADKMNSINVAVLQIYPGSGHTISDGASTGVTSVTSQKSGFGMFIFDAQNSQWKVYDADNRVRLRRIYSDLNAVPNDYVFVTANPSGAVPNVTVTLPTDVADGDRVYVSLYMMGKNQNCTIKVKDGTTDKIRTNKNMMQFPQRKDYPPDDWFSVTSLAFNAGSDYLPYIEFSYLKATKEWVVANYRPIVERVDATNRTRTGVIALAAQAEVNKNLEDNPNDETAITPMTLANKTATETRRGIARLATTAEVNKLSTDTYLDDVIVTPKKLNERTATETRRGLAEIATQAETNGSTDDITIVTPKKLHNRIASPTLTGILALVATGGTANTNTDRAQAGTGIYDHSDYQKAVTPKTLREYKATELQSGAVWLANLNEVINGTVASSNIPTVVTPEMLHKKTSTDARIGLIEIATQAETNAGTDYTRAVTPKTLNDRTATEGLTGIIAIATTAEVSAGTVTNKAIVPSKLKGYLDDTSHITVATADGLTQSGTIWTTVNIGIQSATETQRGTLRVATQSETNAGTLDTVFVTPKKLHAKKATESAEGIIQVATAAETTAGTVANKAVSPKNLKNTIQVDTSWQATDLVRGTVKLSKGAGTWSGNDVAGSTLPDDGYAAVGVAVSPYELNLTLKHYLPIGAKAVDADKLDNLDSSQFIRRDVAQTVNGALTLTQTTTVQANINSTADASFRVMNVNGDLNVGDGSSMGKLRLNGGSANDWSIQASAASGRIAMISTGNTSTVHLSVYNDTRGVVANVKFQAPEIQATSKVSLGSDSVISASGSNLLLGVNSKTTQINTSDAGNIVAAESGNSYKVFTEKNAQTLLNPTYVRKAGDTMSGRLTINNSSLIIAGQAAWSTQDAVNEASRGYWTAEITSAAQYNLLPGYAVPVLEPDPINPDIMIVTRYTYVKAPGTLTQFGNGTAYTYQIWAPRPTSGTGVNALAQSFWIRQMNPITGKFDEWGRMYTSNNPPTAGEIGATSAVGTTVKNMTVTDWIKVGNVKIYPDPVTQTVKFEWVA
Physico‐chemical
properties
protein length:1257 AA
molecular weight: 135150,64270 Da
isoelectric point:6,40885
aromaticity:0,07160
hydropathy:-0,27780

Domains

Domains [InterPro]
DC_1946
ATT
1–196
DC_1946 DC_1209
IPR048391
ATT
1105–1205
IPR048391
YP_010089170.1
1 1257
Architecture
ATT
STR
ATT
STR
ATT 1-196 | STR 347-1104 | ATT 1105-1205 | STR 1206-1242 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_010089170.1
1 1257
Domain Start End Length (AA) Confidence
N-terminal 1 828 828 0,8245
Central domain 829 1027 200 0,2146
C-terminal 1028 1257 229 0,6878
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-828
Central
829-1027
C-terminal
1028-1257

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage phT4A
[NCBI] 		1852638 Uroviricota > Caudoviricetes > Pantevenvirales > Slopekvirus > Slopekvirus pht4A
Host Escherichia coli
[NCBI] 		562 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010089170.1 [NCBI]
Genbank nucleotide accession
NC_055712 [NCBI]
CDS location
range 150134 -> 153907
strand +
CDS
ATGGTAGCTAAATCATTCCGCGCACGAAGTGGCCTTGATGCTGCTGGTGAAAAAGTTATCAACGTTGGGAAGGCTGATCGTAATACGCTGAGTGACGGCGTTAACGTTGACTTTTTCAATGAATTTAACGGAATCCAGCAGTATGACCCGACCCGTGGTTATTCTCAAGACATGGCGATCATTTATGCGCGTCGTATCTGGTACGCAAAACAGAATATTGCTTCCCCTGCTGGGGCTTTCGACGAATCCAAATGGATCGCAACTCGTAATGACCCGAAATGGGTTTATAGTAACGTAACCACTCCGGACGGTAGTATTATCGATTCTGGTAGTTACATTATGGCTGATGGGCGTTTTACCGAACTTCTGTACCTGCTGCCGGACAACCCGACAGAAGGCGACGTAATCACGTTTAAAGATTGCGGTGGTTTGGTTGGTGTAAACAGTATCCTCGTTAAGTCTAACACTCGTCAGATCCGTTTACGTGCGGTACAATCAGCGCAATATAGATTAACTCATCCTTACATGATCGCAACGTTTATCTATAACGGTAACGTGTGGCGTGTTTCTGAGGCGCTGGATAACCGTGATTCTGAAATAGTAAATGCAACCGGAACAGGTTCATTCCAGTTACAATCTGGCATGACAGTTTTCCGTAATAGCGCTACAGGTAAAATCACTCTCCAGTTACCAAAATATGCAAACGACGGTGATGTGATCACAACCTACGACGCTGATAAAATGAACTCTATCAACGTAGCCGTTTTGCAGATATATCCGGGTAGCGGACACACTATTTCTGATGGTGCAAGTACTGGTGTTACTTCGGTAACTAGCCAGAAATCCGGCTTTGGCATGTTCATCTTTGATGCACAGAATAGCCAATGGAAAGTATACGATGCGGATAACCGTGTTCGTCTACGTCGTATCTATAGTGATTTAAACGCAGTTCCAAATGATTATGTTTTTGTTACTGCAAACCCTTCTGGGGCTGTACCAAACGTTACTGTTACTCTCCCAACTGATGTTGCTGATGGTGACCGTGTTTACGTATCCCTGTATATGATGGGTAAAAACCAGAACTGTACAATCAAAGTTAAAGATGGTACTACGGATAAGATCCGAACCAATAAAAACATGATGCAGTTCCCGCAGCGCAAAGATTATCCGCCCGATGATTGGTTTAGCGTAACGTCTCTTGCTTTTAACGCAGGTAGCGATTACCTCCCTTATATCGAGTTTTCTTACCTGAAAGCTACGAAAGAATGGGTTGTTGCTAACTATCGTCCGATTGTTGAACGCGTTGATGCAACAAACCGTACTCGTACTGGTGTTATTGCTCTGGCTGCTCAGGCAGAAGTTAACAAAAACCTGGAAGATAACCCGAACGACGAAACGGCTATTACTCCGATGACGTTAGCAAATAAAACAGCTACTGAAACGCGTCGTGGTATTGCGAGACTGGCAACTACTGCCGAAGTTAACAAACTATCTACAGATACCTATCTGGATGATGTGATTGTTACTCCTAAGAAGCTGAACGAAAGAACAGCTACTGAAACGCGTCGTGGTTTGGCTGAGATTGCAACCCAGGCAGAAACAAACGGAAGTACCGATGACATTACGATCGTGACTCCTAAAAAGCTGCATAATCGTATCGCATCACCAACATTAACGGGGATCCTTGCTCTTGTTGCAACTGGTGGTACTGCAAACACCAACACAGACCGTGCTCAGGCTGGTACTGGAATTTACGATCACTCAGATTATCAAAAGGCGGTAACGCCTAAAACACTGCGTGAATATAAAGCAACTGAATTACAATCCGGTGCTGTATGGCTGGCAAACCTGAATGAAGTTATTAACGGTACTGTTGCAAGTTCTAACATTCCGACCGTCGTTACTCCGGAAATGTTACACAAGAAAACTTCTACTGATGCGCGTATTGGTTTGATTGAGATCGCGACTCAGGCAGAAACCAACGCAGGGACTGATTACACGCGAGCGGTAACGCCTAAAACGCTTAATGATCGTACTGCTACCGAAGGTCTAACCGGGATTATTGCAATTGCAACCACTGCCGAAGTATCAGCAGGTACTGTAACGAATAAAGCGATCGTACCGTCTAAACTGAAAGGTTATCTGGACGATACAAGTCATATTACTGTTGCTACTGCTGACGGGTTAACTCAATCTGGTACTATCTGGACTACGGTTAACATCGGTATTCAATCAGCAACTGAAACTCAACGTGGTACTTTACGCGTTGCTACGCAGTCTGAGACGAACGCAGGGACATTAGATACAGTATTTGTCACCCCTAAGAAGTTACACGCTAAGAAAGCGACTGAGAGCGCAGAAGGTATCATTCAGGTGGCTACGGCTGCTGAAACTACCGCTGGCACCGTTGCAAACAAAGCTGTTTCTCCTAAGAACTTGAAAAATACGATTCAGGTTGATACTTCATGGCAAGCTACCGATCTGGTACGTGGTACGGTGAAACTGTCTAAAGGTGCTGGTACTTGGTCTGGTAATGATGTGGCTGGTTCTACTCTTCCTGATGATGGTTACGCCGCTGTAGGTGTTGCTGTTTCTCCGTATGAATTGAACTTAACGCTGAAACATTATCTGCCTATCGGTGCTAAAGCTGTTGATGCTGATAAACTTGATAATCTGGATTCTTCTCAGTTTATTCGTCGTGATGTTGCACAAACTGTTAATGGTGCGTTGACCCTGACACAAACAACCACTGTACAAGCTAACATCAACTCAACTGCTGATGCATCTTTTCGTGTGATGAATGTCAACGGTGATTTAAACGTTGGCGACGGTTCGTCGATGGGTAAACTTCGTCTGAATGGTGGTTCAGCTAACGACTGGTCTATTCAAGCCAGTGCTGCTTCTGGGCGTATTGCGATGATTTCGACGGGTAATACTAGCACAGTTCATCTTTCTGTGTATAATGATACTCGCGGCGTTGTAGCTAACGTTAAATTTCAGGCTCCTGAAATTCAGGCAACTAGCAAAGTGTCTTTAGGTAGTGATAGCGTTATTTCTGCAAGCGGTTCTAACCTTTTACTGGGGGTGAACAGTAAGACAACGCAGATCAATACATCCGATGCAGGTAACATTGTAGCGGCTGAATCTGGGAACTCTTACAAAGTCTTTACTGAGAAGAACGCGCAAACCTTGCTGAATCCTACGTATGTACGTAAAGCAGGTGATACGATGTCTGGACGGTTGACAATCAACAACAGTTCTCTTATCATCGCAGGTCAAGCGGCTTGGTCAACTCAGGATGCAGTAAACGAAGCATCACGGGGATACTGGACAGCAGAAATTACCTCTGCTGCACAATACAACTTGCTTCCTGGTTATGCGGTTCCGGTTCTCGAACCAGATCCGATTAACCCAGATATTATGATTGTAACCCGTTATACCTACGTTAAAGCACCTGGTACGTTAACTCAGTTTGGTAACGGAACCGCATACACTTATCAGATTTGGGCACCTCGTCCGACCTCTGGTACTGGTGTTAACGCGTTGGCGCAATCCTTCTGGATCCGTCAAATGAATCCAATTACAGGTAAATTTGATGAATGGGGCCGCATGTATACGAGCAACAACCCGCCTACTGCTGGTGAAATTGGGGCAACGTCTGCTGTTGGTACTACGGTTAAAAACATGACTGTTACTGATTGGATCAAAGTTGGTAATGTTAAGATTTACCCAGATCCGGTTACTCAGACAGTTAAATTTGAGTGGGTGGCATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
6d62c1ae09c6c5f2e2b6a0a98620f41ae518758f0026f112c7ec6ceda6eeae37
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5515
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Characterization and in vitro evaluation of new bacteriophages for the biocontrol of Escherichia coli Pereira,C., Moreirinha,C., Cunha,A., Lewicka,M., Almeida,P.J., Clemente,C., Romalde,J.L., Nunes,M.L. and Almeida,A. — — GenBank