Protein

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Genbank accession
YP_008853931.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TF
Evidence RBPdetect
Probability 0,90
TF
Evidence RBPdetect2
Probability 0,96
Protein sequence
MAYSTQRAVSDGTMTYLDLSISYQARADIKVFFNDLPAPAGTWAWVGTTDKRISFTPAVPNGTEVLVQRTTRIDRIINVFARGAKFNNSTMDENFLQVLYLTQEAVEGSALSDIYNDVDFHGYKIKNLGLAVEDKDAITFGQVKTMNQSAYQAMLDAQAARDIANASRDKAKQWATQLTTPVEGTDLSSKQYALNAGVSAAAALGSQNAAALSESHASDSEDAAAASAAAAAQSAQNAHDAALPADTLVADVADAKAKANAATAAVATAVQKAGDTMSGELKSTNTNQWRIKAGSYGVFWRFDGSNHYLMSTAANDQDGTYSARRPFVYNPSTGNVTLTDSAGGGQTTIGGGTATLLSSNTLSQFIFNANGFRPMLRSNSGAAAMEFINSPNTAANFTVYETGTVVARAEVQASGSRHAVDGNIYGTVWGGWLSNWLNTMLAGKQNVRNSGWANGGYVVTNSSNSMQIWWDGNPQMSVDSSYQGVLMHTGNFSNWAAQAGANCQWNSGASEYGPIGNGTVDVGAPQVVIGARTCGGSSTANCIWLRSVWIRNR
Physico‐chemical
properties
protein length:553 AA
molecular weight: 58480,83860 Da
isoelectric point:5,58695
aromaticity:0,08861
hydropathy:-0,25027

Domains

Domains [InterPro]
DC_0245
STR
1–547
DC_0245
IPR005604
ATT
4–112
IPR005604 IPR048390 G3DSA:6.20.70.20
YP_008853931.1
1 553
Architecture
ATT
STR
ATT
STR
ATT 1-112 | STR 113-268 | ATT 269-327 | STR 328-547 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Ralstonia phage RSB3
[NCBI] 		1402875 Uroviricota > Caudoviricetes > Autographivirales > Jiaoyazivirus > Jiaoyazivirus RSB3
Host Ralstonia solanacearum
[NCBI] 		305 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Betaproteobacteria > Burkholderiales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_008853931.1 [NCBI]
Genbank nucleotide accession
NC_022917.1 [NCBI]
CDS location
range 36449 -> 38110
strand +
CDS
ATGGCCTACAGTACGCAGCGTGCCGTCAGTGACGGCACGATGACGTACCTCGACCTCTCCATCAGCTATCAGGCGCGGGCAGACATTAAGGTGTTCTTCAATGATCTGCCTGCGCCCGCTGGCACGTGGGCGTGGGTGGGTACGACCGATAAGCGAATCAGTTTCACGCCTGCTGTTCCTAACGGGACGGAGGTGCTGGTGCAGCGTACTACGCGCATCGACCGCATCATCAACGTGTTCGCACGCGGTGCGAAGTTTAACAACAGCACGATGGACGAGAACTTCTTGCAGGTGCTCTACCTGACACAAGAAGCCGTCGAGGGCAGCGCCCTGTCCGACATCTATAACGATGTGGACTTCCACGGCTACAAGATCAAGAACCTCGGCCTCGCCGTCGAGGACAAGGACGCTATCACGTTCGGCCAAGTCAAGACGATGAACCAGTCCGCGTATCAGGCAATGCTCGATGCGCAGGCTGCGCGCGACATTGCGAATGCATCGCGGGACAAGGCTAAGCAGTGGGCCACGCAGTTGACTACGCCCGTCGAAGGTACGGACCTGTCCTCGAAGCAATACGCGCTGAACGCAGGCGTCTCCGCAGCAGCGGCCCTCGGGTCGCAGAACGCGGCAGCGCTGAGCGAGTCGCACGCCAGCGATAGCGAGGACGCAGCGGCAGCTTCGGCAGCGGCAGCAGCACAGAGCGCGCAGAACGCGCACGATGCAGCCCTGCCCGCCGACACGCTGGTCGCTGATGTGGCAGACGCGAAGGCCAAGGCCAACGCAGCTACGGCCGCTGTAGCGACTGCGGTGCAGAAGGCTGGTGACACGATGAGCGGTGAACTGAAGTCCACGAACACTAATCAGTGGCGCATCAAGGCAGGCAGCTACGGCGTGTTCTGGCGGTTCGATGGCTCGAACCACTATCTGATGTCAACGGCTGCAAACGACCAAGATGGCACGTACAGCGCACGGCGTCCGTTCGTCTACAACCCGAGCACCGGCAACGTCACGCTGACGGATAGTGCGGGCGGCGGGCAGACGACTATCGGCGGAGGTACGGCTACACTGCTCAGCAGCAACACGCTGTCTCAGTTCATCTTCAACGCCAACGGCTTCCGCCCAATGCTCCGCTCGAACTCGGGCGCAGCGGCGATGGAGTTCATCAACAGTCCGAACACTGCTGCTAACTTCACTGTGTATGAGACGGGTACGGTCGTCGCTCGCGCCGAGGTGCAAGCAAGCGGCTCGCGCCACGCGGTGGATGGCAACATCTACGGCACGGTGTGGGGTGGTTGGTTGTCGAACTGGCTCAACACCATGCTCGCCGGTAAGCAGAACGTGCGCAACAGCGGGTGGGCTAACGGCGGCTACGTGGTCACGAACTCCAGTAACAGCATGCAAATCTGGTGGGACGGCAACCCGCAAATGTCGGTGGACTCGTCGTATCAGGGCGTGCTCATGCACACCGGGAACTTCTCGAATTGGGCCGCGCAAGCTGGTGCTAACTGCCAGTGGAACTCAGGTGCTTCGGAGTACGGCCCTATCGGTAACGGTACGGTGGATGTCGGTGCGCCTCAAGTCGTGATCGGCGCGCGTACCTGCGGTGGCTCGTCCACTGCGAACTGTATCTGGTTGCGCTCCGTCTGGATTCGCAACCGTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
35b9da625444ca72dca427eed932a3ec72b3f8966a4f5c36b12dcaff9a5e2bb1
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6426
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genomic characterization of Ralstonia solanacearum phage phiRSB3 Kawasaki,T., Matsunami,M., Fujie,M. and Yamada,T. 2009-01 — GenBank