Protein

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Genbank accession
AFV51018.1 [GenBank]
Protein name
tail tube
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MILEGVYPSFLKGVSQQTPQERSDGQLGAQLNLLSDAVTGLRRRGGVKFRTKLAGIPNSSYIRLIDINGVNYIIIVDTVTGTLKIYNFDGSLLKAHQTDYLKASNGKASIRSTVSRNNCFVLNTEQVITKTPTGGTNPIPNPSTMGYISIRSGQFSKMYSVDIKSGSYTLSFGVGTSGSEAWQATPEWVATEMENRIKEDTTLNARYTVVREGSTVALKAKSAIDTNLLVIESGTGSTYIQTSNSSRVQGKQDIIANLPNILDKYIIAVGTVGNSAYYQYNATTSTWKECGVYEAPYKFTNEPIYWYFDDTDTIQVKSLDIQPRTAGDDDNNPLPKFVDFGITGISAYQSRLVLLSGSYVNMSATADFNVYMRTTVEELQDDDPIEVSSTALSSAQFEYAVPYNKDLVLLAQNQQAVIPANSTVLTPKTAVIYPSSKANISMASEPQVVSRSLYYTYQRGTDYYQVGEMIPNAYSDAQYYAQNLADHIPLYATGVCTSITGSTTDNMAVFSSDQKELLVHQYLWAGEDRPLMSFHKWELPYDVLHVQFLQEYLVLFMDVGDDLVVGTINVQLNQLDNKPIPFLDIYQYVDIVDGEGTLPEFLPDGELVAAVYSSETMRHAMVQYEIEGTKIKCQFNGRIYLGVPYESSLTLTPPFVKDDKGRVVAGSNSTVVDLTMTFKGTGEFEYHVSDTYGDVFDGETSAQAWSEAQLGYTRVNTVSDVKFPCGTLLSSTEFSVRTTGTTELNIISTSYNIRIPNRGRRRL
Physico‐chemical
properties
protein length:763 AA
molecular weight: 84404,68870 Da
isoelectric point:4,88681
aromaticity:0,10223
hydropathy:-0,23591

Domains

Domains [InterPro]
DC_0058
STR
1–763
DC_0058
IPR058003
TTP
7–760
IPR058003
AFV51018.1
1 763
Architecture
STR
STR 1-763
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AFV51018.1
1 763
Domain Start End Length (AA) Confidence
N-terminal 1 138 138 0,9788
Central domain 139 339 202 0,1249
C-terminal 340 763 423 0,1933
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-138
Central
139-339
C-terminal
340-763

Taxonomy

  Name Taxonomy ID Lineage
Phage Acinetobacter phage Abp1
[NCBI] 		1235824 Uroviricota > Caudoviricetes > Autographivirales > Beijerinckvirinae > Friunavirus
Host Acinetobacter baumannii
[NCBI] 		470 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Moraxellales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AFV51018.1 [NCBI]
Genbank nucleotide accession
JX658790 [NCBI]
CDS location
range 26605 -> 28896
strand +
CDS
ATGATTCTTGAGGGAGTGTACCCGTCATTCTTGAAAGGTGTATCACAGCAAACACCTCAAGAGCGTAGTGACGGACAATTAGGCGCACAGCTTAATTTATTATCTGATGCTGTAACAGGTTTACGTAGACGTGGTGGGGTTAAATTCCGAACCAAGTTAGCAGGTATTCCTAATAGTAGCTATATACGTTTAATTGACATCAATGGTGTTAATTACATTATAATCGTAGATACTGTTACAGGTACTTTAAAGATTTATAATTTTGATGGTTCCTTACTTAAAGCACATCAAACAGATTATCTTAAAGCCTCCAATGGTAAGGCTAGTATCCGTAGTACAGTCTCACGTAATAATTGCTTTGTATTAAATACAGAACAAGTTATTACTAAGACACCTACAGGCGGTACTAACCCTATACCTAATCCAAGTACAATGGGTTATATCAGTATTCGTTCTGGTCAGTTCTCTAAGATGTATTCAGTAGATATCAAGTCAGGTTCTTATACCTTAAGTTTTGGTGTGGGTACATCGGGTAGTGAGGCATGGCAGGCTACTCCTGAATGGGTAGCTACTGAGATGGAGAATAGGATTAAAGAGGATACTACTCTTAATGCGCGTTATACTGTTGTACGGGAAGGTAGTACGGTTGCACTTAAAGCTAAATCTGCTATAGATACAAACTTGCTAGTGATTGAGTCTGGTACAGGTAGTACTTATATTCAGACGAGTAATTCTAGTCGTGTACAAGGTAAACAGGATATTATTGCTAATCTACCTAATATCTTAGATAAGTATATTATTGCGGTAGGTACAGTAGGTAACTCCGCTTATTACCAATACAACGCTACTACAAGTACTTGGAAAGAATGTGGTGTATATGAGGCTCCATATAAGTTCACTAACGAACCTATTTACTGGTACTTTGATGATACCGATACTATCCAAGTTAAAAGCCTAGATATTCAACCACGTACAGCAGGTGATGATGATAATAACCCATTACCTAAGTTTGTGGATTTTGGTATTACAGGTATTAGTGCATACCAATCACGTTTAGTACTACTTAGTGGTTCATATGTTAATATGAGTGCTACAGCAGACTTTAATGTATATATGCGTACCACTGTAGAGGAATTACAGGATGATGATCCTATTGAGGTGTCTAGTACTGCTCTAAGTTCGGCACAGTTTGAGTATGCTGTTCCGTACAATAAAGACTTAGTTTTATTGGCTCAGAATCAACAAGCTGTTATCCCAGCTAATAGTACAGTACTTACACCTAAGACGGCTGTTATCTATCCAAGTTCAAAAGCTAACATTAGTATGGCTAGTGAACCACAGGTCGTATCACGTAGTTTGTATTATACATATCAACGTGGTACAGATTACTATCAAGTTGGTGAGATGATCCCTAATGCTTACTCAGATGCACAGTACTATGCACAGAACTTAGCAGACCATATCCCGTTATATGCTACAGGTGTTTGTACTTCAATCACAGGTAGTACTACTGATAATATGGCAGTGTTCAGTTCAGACCAGAAAGAGTTACTTGTACACCAGTACTTGTGGGCAGGTGAAGACCGTCCATTAATGAGCTTCCATAAATGGGAATTACCTTATGATGTGCTTCATGTACAGTTCCTGCAAGAGTATTTAGTATTATTCATGGATGTAGGTGATGATTTAGTGGTTGGTACTATTAACGTACAGTTAAACCAACTAGACAATAAACCTATCCCATTCTTAGACATTTACCAATACGTAGATATTGTGGATGGTGAAGGTACATTACCTGAGTTCTTACCAGATGGTGAGTTAGTAGCTGCGGTATACAGTTCTGAGACTATGCGTCATGCTATGGTTCAGTATGAAATCGAAGGTACTAAGATTAAGTGTCAATTCAATGGACGTATTTATCTAGGTGTACCTTATGAAAGTTCACTCACACTAACACCTCCTTTTGTTAAAGATGATAAAGGTCGCGTAGTTGCTGGAAGTAATAGTACAGTAGTTGATCTTACAATGACATTCAAAGGTACAGGTGAGTTTGAGTACCATGTTTCTGATACCTATGGTGATGTATTTGATGGTGAAACATCCGCACAGGCTTGGTCAGAAGCACAACTAGGGTATACGCGAGTAAATACAGTTAGTGATGTTAAATTCCCGTGTGGTACATTATTAAGTTCGACAGAGTTTAGTGTTAGAACTACTGGTACAACTGAGTTAAACATCATTAGCACTAGTTATAATATCCGTATACCAAACAGAGGACGGAGACGTTTATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
6dd2889433b65fdf7f3005b30da6ff139ccfff234b2fd2b0ba57e4aa386a179a
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8660
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Characterization and Genome Sequencing of Phage Abp1, a New phiKMV-Like Virus Infecting Multidrug-Resistant Acinetobacter baumannii Huang,G., Le,S., Peng,Y., Zhao,Y., Yin,S., Zhang,L., Yao,X., Tan,Y., Li,M. and Hu,F. 2013 23328903 GenBank