Protein

View in Explore
Genbank accession
YP_009099788.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence RBPdetect
Probability 0,91
TF
Evidence RBPdetect2
Probability 0,96
Protein sequence
MTVSNTPIQTASTSSDAGSLSAIVNAVITRLSQTVVQSNLNETQVGNLADLDTDVKSSVVGAINDLVSKFDSGELVATYIGQLQDLNTSVKSNVVAAINEVNNKVGDIGALETEATSNVVAAINEIFAVVQGLGDIDSGEIFNQLNARVIKTGDTMSGVLNILSGVPSADTPLLGLGWNTLLPSWKVYLDSAESYSLFAFDKTTGLVQGRRQTLDKNGNFTVAGTLKTGNGTALLDNDGSVVGNAWIAVGGSANAIASINAKFAGYFQSIGGSITGKLVENIGFTGNEVTFRDLKYGNATFRSWEEIVDASENYVLRSHNKISDTIIQSALKLSLTGNMEIAGTFKSGGGLTVGTATFGTDGGITGSAWNAFGASPNAISAIQNYVSGRLAAFVGFPGGGTTGQALVKASNTENDFAWGGPFAPLVHTHVIADTTGLQSALDAKAPLANAALTGNPTAPTPSVGDNDTSIATTAFVQAAIGSMGKRSLTISTAAPSGGVDGDVWFQTEV
Physico‐chemical
properties
protein length:509 AA
molecular weight: 52195,41790 Da
isoelectric point:4,54015
aromaticity:0,06680
hydropathy:0,09253

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Rhizobium phage vB_RleM_P10VF
[NCBI] 		1527770 Uroviricota > Caudoviricetes > Pootjesviridae > Innesvirus P10VF >
Host Rhizobium leguminosarum
[NCBI] 		384 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Alphaproteobacteria > Hyphomicrobiales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009099788.1 [NCBI]
Genbank nucleotide accession
NC_025429.1 [NCBI]
CDS location
range 23262 -> 24791
strand -
CDS
ATGACCGTAAGCAACACACCAATTCAAACGGCTTCTACGAGTTCTGATGCCGGTTCACTTTCGGCTATCGTCAATGCTGTCATCACTCGGTTGTCACAGACAGTCGTTCAGTCGAACCTGAATGAAACACAGGTCGGAAATCTGGCTGATCTCGATACTGACGTGAAATCGAGTGTCGTAGGTGCCATCAACGATCTGGTGAGCAAGTTCGACTCTGGTGAACTCGTTGCTACCTACATCGGTCAGCTCCAGGATCTCAACACTTCGGTCAAGTCGAACGTCGTAGCTGCCATCAACGAAGTCAACAACAAGGTTGGAGACATCGGTGCACTCGAGACTGAAGCGACGAGCAACGTCGTAGCTGCGATCAACGAGATCTTTGCAGTGGTTCAAGGTCTCGGAGACATCGACAGCGGTGAGATCTTCAATCAGCTGAATGCTCGTGTCATCAAGACTGGCGACACGATGTCTGGAGTGCTTAACATTCTCTCCGGTGTTCCGAGCGCAGACACTCCTCTACTCGGTCTCGGCTGGAACACGCTTCTTCCTTCCTGGAAAGTGTATCTCGATTCTGCTGAGTCGTACTCTCTGTTCGCATTCGACAAGACGACTGGTCTGGTTCAAGGACGTCGCCAGACTCTCGACAAGAACGGTAACTTCACTGTCGCAGGCACCCTGAAGACAGGCAACGGAACTGCTCTCTTGGATAACGATGGTTCGGTCGTCGGTAACGCATGGATTGCTGTCGGCGGTTCTGCTAACGCTATCGCTTCTATCAATGCAAAATTCGCCGGTTACTTCCAGTCCATCGGCGGATCGATCACCGGCAAGCTCGTCGAGAACATCGGCTTCACCGGCAACGAAGTCACATTCCGAGATCTGAAGTACGGCAACGCGACTTTCCGTAGCTGGGAAGAGATCGTCGATGCCAGCGAGAACTACGTTCTTCGTTCTCACAACAAGATCAGCGACACGATCATCCAGTCTGCTTTGAAGCTGAGTCTGACAGGCAACATGGAAATCGCTGGTACGTTCAAGTCCGGTGGCGGTCTGACTGTCGGTACTGCAACATTCGGCACTGACGGTGGCATCACCGGTTCTGCATGGAATGCTTTCGGTGCTTCGCCAAACGCCATTAGCGCCATCCAGAACTACGTCTCTGGACGACTCGCTGCGTTCGTTGGTTTTCCTGGTGGCGGTACGACTGGTCAAGCTCTCGTCAAAGCTTCGAACACAGAGAACGACTTCGCATGGGGTGGACCATTCGCTCCGCTCGTCCATACTCACGTTATCGCAGACACCACTGGTCTCCAGTCTGCTCTTGATGCTAAGGCGCCTCTTGCGAATGCTGCACTCACTGGCAATCCGACTGCGCCGACTCCATCTGTCGGTGACAATGATACGTCCATTGCGACAACGGCTTTCGTTCAGGCAGCTATCGGCAGCATGGGCAAGAGAAGTCTGACGATCTCAACTGCTGCTCCATCTGGTGGAGTCGACGGAGATGTCTGGTTCCAGACGGAGGTGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
d325fb6741a4a8c90f3123c5273a3a6eaaa77411304cbf1e001fce7e6a83243e
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6852
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Isolation and characterization of Rhizobium leguminosarum phages from western Canadian soils and complete genome sequences of rhizobiophages vB_RleS_L338C and vB_RleM_P10VF Restrepo-Cordoba,M., Halmillawewa,A.P., Perry,B., Hynes,M.F. and Yost,C.K. 2015-09-16 — GenBank