Protein

View in Explore
Genbank accession
DBA08828.1 [GenBank]
Protein name
phage tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence RBPdetect
Probability 0,84
Protein sequence
MAQKIIDTTTNNGSYIGDPAKTAFGKCNENFTEIYGRDGVNGVRPISNGGTGATTAAGARSNLELGTAAMANVGTADGNVMTVGAFGLGSPSGGPSGAPDSTFRPGFYRYPVGASGAPYGDSAGSLLVNTLGGNYVQQIAITPRPSTTNPWVGCRHFDGGGNPGPWVLFYHSGNTTRATDGTLRAASPVVRIANVAASLRPDLNELDFEPAGAWGVANAEALGVTVQRLDVGVYQISGCLGLAKEGWRVIDPASPDGGRPLGITDSEQAENGTVTIRLFRQRWTLSDDGEMVLGKGAPLDVPLNSWIDVRLSMPAPPEMQPETL
Physico‐chemical
properties
protein length:324 AA
molecular weight: 33581,03190 Da
isoelectric point:4,92489
aromaticity:0,07099
hydropathy:-0,21358

Domains

Domains [InterPro]
DC_0709
STR
1–323
DC_0709
IPR058008
RBD
174–315
IPR058008
DBA08828.1
1 324
Architecture
STR
STR 1-323 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage vB_PaeS-D14P
[NCBI] 		2969644 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Pseudomonas aeruginosa
[NCBI] 		287 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Pseudomonadales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
DBA08828.1 [NCBI]
Genbank nucleotide accession
BK061589.1 [NCBI]
CDS location
range 307 -> 1281
strand -
CDS
ATGGCTCAGAAAATTATCGATACGACAACTAATAATGGTAGCTATATAGGTGACCCAGCGAAGACCGCCTTCGGAAAGTGTAACGAGAACTTCACAGAAATTTATGGGCGTGATGGGGTCAATGGAGTTCGCCCAATTTCAAACGGGGGAACAGGTGCGACTACTGCCGCAGGCGCGCGATCGAATCTTGAGTTAGGAACTGCCGCGATGGCTAATGTCGGTACCGCTGATGGGAACGTGATGACCGTCGGTGCCTTCGGGCTGGGTAGCCCGAGCGGCGGTCCTTCCGGCGCTCCCGACTCGACTTTCCGGCCGGGTTTCTATCGCTATCCCGTCGGCGCCTCCGGTGCGCCGTACGGCGACTCAGCGGGCTCGTTGCTCGTGAATACGCTCGGCGGCAACTACGTACAGCAGATCGCGATCACGCCACGGCCCAGCACGACGAATCCCTGGGTTGGCTGCCGACATTTCGACGGAGGGGGCAATCCTGGGCCGTGGGTCCTGTTTTATCACTCGGGAAACACGACGAGAGCAACCGACGGGACGCTTCGTGCGGCATCGCCGGTCGTGCGTATCGCCAACGTTGCTGCGAGCTTGAGACCCGATCTCAATGAGCTGGATTTCGAGCCTGCTGGCGCGTGGGGTGTAGCTAATGCAGAGGCCCTCGGCGTTACCGTCCAACGCCTCGATGTCGGCGTCTACCAGATATCTGGCTGCCTGGGCCTTGCGAAAGAGGGCTGGCGCGTGATCGATCCTGCGTCTCCTGACGGCGGTCGCCCGCTCGGCATCACCGATAGCGAACAGGCTGAGAATGGGACGGTCACCATCCGGCTCTTCAGACAGCGCTGGACACTCAGTGACGACGGCGAAATGGTGCTCGGGAAGGGCGCCCCACTGGATGTCCCGCTCAACAGTTGGATTGATGTCCGATTGTCGATGCCGGCACCTCCCGAGATGCAGCCCGAGACTCTATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
17bfbb9cd736d2c6081764936956b0c39de4cac89136770954c519948287cefa
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8121
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Prophage identification and molecular analysis in the genomes of 53 Pseudomonas aeruginosa strains isolated from critical care patients Gonzalez de Aledo,M., Blasco,L., Lopez,M., Ortiz-Cartagena,C., Bleriot,I., Pacios,O., Hernandez-Garcia,M., Canton,R. and Tomas,M. 2023 — GenBank