Protein

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Genbank accession
XGX96651.1 [GenBank]
Protein name
structural protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MANEIGTATNFEDFFSKIVAFLTTNATLVAAGQAWQALRVRRDNIDTYTTSLPDSFTGNGRKQIHTFRYDPRSLNTNNPASNGAESFWYTNSGFSAGSSYGQWKLRQAREVKTVRIKAPIGTSYASYAPKSFRLQYSDDGTAWTTALTVSNAPNWSAGEQRDFAVPGTPGSHLYWKIIWDATQVVSYIGWQELLLLEADGTVANHFGSEVILKALGNSGLDEIYTGIRAEYDSAAGWYNLFMNGYTGYDANEMSWFNQPGALPGYGAQYTRATPMVPLWNTTMPYWMVASGRSFRFCIKVGTNYEGGYLGFILPYATPNQYPYPLAVGGSLCPINDSSRSAEWRYSYVSFAHGVYPGPGTQNYPESENLWATLYLRSPEGAWNYHGNRSAYASNNSEGVGGPTVSSSPPYNVDINNAGLRNVWPHCMNGQWSRGLRPYRECLGGGYILQPCVLIQRSPAQVLGELEGTFAISGYQNSAENTTVFNGKTHVVFQNAYRNTIHEHWALSMD
Physico‐chemical
properties
protein length:509 AA
molecular weight: 56410,89380 Da
isoelectric point:6,32450
aromaticity:0,14145
hydropathy:-0,40275

Domains

Domains [InterPro]
DC_0072
STR
1–509
DC_0072
G3DSA:2.60.120.260
STR
69–187
G3DSA:2.60.120.260
IPR008979
STR
82–152
IPR008979
PF22633
RBD
83–164
PF22633
XGX96651.1
1 509
Architecture
STR
STR 1-509
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XGX96651.1
1 509
Domain Start End Length (AA) Confidence
N-terminal 1 43 43 0,1325
Central domain 44 242 200 0,6901
C-terminal 243 509 266 0,9616
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-43
Central
44-242
C-terminal
243-509

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage NEU2024
[NCBI] 		3250169 No lineage information
Host Pseudomonas aeruginosa
[NCBI] 		287 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Pseudomonadales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XGX96651.1 [NCBI]
Genbank nucleotide accession
PQ144889 [NCBI]
CDS location
range 17070 -> 18599
strand +
CDS
ATGGCAAACGAAATCGGAACCGCGACGAACTTTGAGGACTTCTTCAGCAAGATCGTCGCCTTTCTTACCACGAACGCGACCCTGGTGGCGGCGGGCCAGGCTTGGCAGGCGCTGCGCGTCCGCCGGGACAACATCGACACGTACACCACCAGCCTCCCGGACTCCTTCACGGGTAACGGTCGGAAACAAATCCACACATTCCGCTATGATCCGCGGTCGCTTAACACAAACAACCCCGCCTCGAACGGTGCGGAGTCCTTCTGGTACACCAACTCTGGCTTCTCCGCCGGGAGCAGCTATGGTCAATGGAAACTGCGACAGGCGCGCGAAGTCAAGACCGTGCGCATCAAGGCCCCCATCGGGACCAGCTACGCGAGTTATGCCCCCAAGTCCTTCCGGCTCCAATACTCGGATGACGGAACCGCCTGGACTACGGCCCTGACCGTCTCGAACGCGCCGAACTGGTCCGCCGGGGAGCAGCGGGACTTCGCCGTGCCCGGCACCCCCGGTTCGCACCTGTATTGGAAGATCATCTGGGACGCGACCCAGGTGGTGAGCTACATAGGGTGGCAGGAACTCCTCCTGCTCGAAGCGGACGGGACGGTGGCCAACCACTTTGGGTCGGAGGTCATCCTAAAGGCCCTGGGCAACTCGGGTCTGGATGAAATCTACACCGGCATCCGGGCGGAGTATGACAGCGCCGCAGGCTGGTACAACCTGTTCATGAACGGGTACACTGGCTATGACGCCAACGAAATGTCTTGGTTCAACCAACCGGGAGCCCTCCCGGGCTACGGGGCGCAATACACTCGGGCAACCCCGATGGTGCCGCTGTGGAACACCACTATGCCGTACTGGATGGTGGCTTCGGGCCGCTCCTTCCGGTTCTGTATCAAGGTCGGCACGAACTATGAGGGGGGCTATCTTGGTTTCATTCTCCCGTATGCTACGCCCAATCAATACCCGTACCCGCTCGCTGTCGGGGGTTCACTCTGCCCCATCAACGACAGCTCCCGGTCCGCGGAGTGGCGTTATTCATACGTGAGCTTCGCCCACGGCGTGTATCCCGGGCCGGGCACTCAGAACTACCCGGAAAGCGAGAACCTGTGGGCGACCCTTTACCTGCGCAGCCCGGAAGGAGCGTGGAACTACCATGGCAACCGTTCTGCCTACGCTTCAAACAACAGCGAGGGCGTAGGGGGTCCGACCGTTAGCAGCTCGCCTCCATACAACGTGGACATTAACAACGCCGGTTTGCGCAACGTCTGGCCTCACTGCATGAACGGCCAGTGGTCCCGGGGCCTTCGCCCCTACCGCGAGTGCTTGGGCGGCGGGTATATTCTCCAGCCTTGCGTGCTGATTCAGCGGTCGCCTGCCCAAGTCCTCGGGGAGCTGGAGGGGACGTTTGCAATCAGCGGCTACCAAAACAGCGCGGAGAACACGACCGTGTTCAACGGCAAGACTCACGTGGTGTTCCAGAATGCTTACCGCAACACGATCCACGAGCACTGGGCGCTGTCGATGGATTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
56ce65633d3cf8d9aceda75c1ae11ccd4ce3be77569c03ee1610b2115ef5d9de
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6786
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Characterization of Pseudomonas phage NEU2024 Theodoridis,L., Taner,F., Uskudar Guclu,A., Basustaoglu,A., Sanlidag,T. and Petrovski,S. 2007-09 — GenBank