Protein

View in Explore
Genbank accession
YP_009055577.1 [GenBank]
Protein name
tail protein
RBP type
TSP
Evidence UniProt/TrEMBL
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MNELFSQGGKGSTGILTNKQAIARKFGVKQNEVVYFSVGALLSGYKVIYDKTTQLAYSLPADIDSGVTAVSLSTSGILVHSAGSVDLGALAVTREEYVTLPDTFATGVTVNAKNELVVFTDGKYRWDGALPKEVPAGTTPSSTGGIDLGAWVSVGVDALRSDLNKPNGLSYIGTASSVSELSSLSGSIGDSIILDSYVSGFNLGGGIMVAVSEDTTIDNIVTFLGSGVVWKRKFFNGTVDVYDAGYTGTGDIAPFINKVNSAGYDCLVPTSGTISAPIVLDVAKGSLVGANKCTLTEVEGLTGEYYLIVTNSNTDYTARDAINATALLTGISFVGKGARKMCLGGSTSREVAELRISNCGFISTAGIEFKDNAYRVLFDKCIISRSFTNSVIFNSPANAGEVIKFNHCWMVDNGGPFTFENGQFIFDSCSLPAGKKAGYFDPVMALGDNATLVFANGNIEYQPGQSFVVFTVNGSSRLSIKDSTLLLPEGYSTVPIVSNGDGVVSFNNCSLPLYGNTTVGTGFPTRQLVGGSSKKITSRGCFPRAGFITTNWNLGSIVSPYINSISNGSGQFNNISNWTLSQTGTGIVTATVGNDVPNDLMFSTSFVLSVPSVDAAANFTQTIIDCEPGRYFQFGFWSKSTTTTLVSLRFLDQLGNAVADSIGYIIPVGNTFNFYALVDCVPQGAYKAEINFNVSSVVGGVVIHNTIYGLI
Physico‐chemical
properties
protein length:711 AA
molecular weight: 74873,45570 Da
isoelectric point:4,92734
aromaticity:0,10127
hydropathy:0,17342

Domains

Domains [InterPro]
G3DSA:3.30.2020.50
ATT
1–95
G3DSA:3.30.2020.50 G3DSA:2.10.10.80 DC_0715
DC_0018
ATT
2–260
DC_0018
IPR040775
RBD
91–155
IPR040775
YP_009055577.1
1 711
Architecture
ATT
STR
ATT 1-260 | STR 261-662 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009055577.1
1 711
Domain Start End Length (AA) Confidence
N-terminal 1 252 252 0,9969
Central domain 253 561 310 0,9918
C-terminal 562 711 149 0,9949
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-252
Central
253-561
C-terminal
562-711

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage vB_EcoP_PhAPEC5
[NCBI] 		1395983 Uroviricota > Caudoviricetes > Schitoviridae > Gamaleyavirus > Gamaleyavirus APEC5
Host Escherichia coli
[NCBI] 		562 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009055577.1 [NCBI]
Genbank nucleotide accession
NC_024786 [NCBI]
CDS location
range 60802 -> 62937
strand -
CDS
ATGAACGAGTTATTCTCACAAGGCGGTAAAGGCTCTACTGGTATTCTCACCAATAAGCAAGCCATTGCCCGTAAATTTGGTGTTAAGCAGAACGAAGTTGTTTACTTCTCGGTTGGTGCACTGCTTAGTGGTTATAAAGTTATTTATGACAAGACGACTCAGCTAGCTTACTCATTGCCTGCTGACATTGATTCAGGGGTTACTGCTGTAAGTCTTAGTACTTCCGGTATATTAGTACATTCTGCTGGTAGTGTGGACTTAGGTGCTCTAGCTGTTACCCGGGAAGAGTATGTAACCTTACCCGATACATTTGCTACTGGCGTAACTGTTAATGCTAAGAATGAACTGGTTGTATTTACTGATGGTAAATACCGTTGGGATGGGGCACTGCCTAAAGAGGTTCCTGCTGGGACTACCCCATCCTCAACTGGCGGAATTGATCTGGGAGCATGGGTTAGTGTTGGTGTTGACGCTCTTAGGAGTGATTTAAATAAACCAAATGGCTTATCTTATATAGGAACTGCATCATCGGTTTCTGAGTTATCATCATTATCAGGATCAATCGGCGATTCCATAATCCTTGATTCGTATGTGAGCGGGTTTAATCTTGGTGGTGGTATTATGGTAGCTGTTAGTGAGGATACCACTATAGACAATATTGTTACCTTCTTAGGAAGTGGGGTGGTATGGAAAAGGAAATTCTTCAACGGCACCGTGGACGTGTATGATGCTGGGTATACCGGTACGGGGGATATTGCTCCGTTCATTAACAAGGTAAACTCTGCCGGTTACGACTGTCTTGTACCTACCTCAGGGACCATTAGTGCACCTATCGTACTGGATGTGGCTAAGGGATCTTTAGTAGGAGCTAATAAGTGTACCCTTACGGAAGTGGAAGGTTTAACAGGGGAGTATTACTTAATCGTAACCAACTCTAATACAGATTACACAGCCCGTGATGCCATTAATGCTACCGCCTTATTAACAGGAATCTCCTTTGTAGGTAAAGGTGCTCGAAAGATGTGTTTGGGTGGTAGCACCTCAAGGGAGGTAGCAGAATTACGTATATCTAACTGCGGGTTTATATCTACTGCGGGTATTGAGTTTAAAGATAATGCATATCGTGTCCTGTTTGATAAGTGCATCATTTCTCGTAGTTTTACTAACTCTGTAATCTTTAATTCCCCGGCTAATGCAGGTGAGGTTATAAAGTTCAACCACTGCTGGATGGTTGATAATGGAGGTCCATTTACCTTTGAGAATGGGCAGTTCATCTTTGATTCATGCTCATTGCCAGCAGGTAAAAAGGCAGGCTACTTCGACCCGGTAATGGCATTGGGTGATAATGCTACCTTGGTGTTTGCTAACGGTAATATTGAGTATCAACCTGGGCAGAGTTTTGTAGTCTTTACTGTGAATGGAAGCTCCCGACTCAGTATTAAAGATTCTACGCTTCTGCTTCCGGAAGGCTACAGTACAGTGCCTATTGTTAGTAACGGTGACGGGGTAGTTAGTTTTAATAACTGCTCACTTCCACTGTATGGTAACACTACTGTAGGTACTGGATTTCCAACCCGTCAGTTAGTAGGTGGCTCTAGTAAGAAGATTACATCACGTGGGTGCTTCCCCCGTGCAGGATTCATCACAACTAACTGGAATCTAGGAAGCATTGTAAGCCCCTATATTAATAGTATTAGTAATGGGTCTGGGCAGTTTAATAACATATCTAACTGGACACTCTCGCAAACCGGAACCGGCATTGTCACTGCTACTGTAGGAAACGATGTCCCTAATGATTTAATGTTTTCAACTTCTTTTGTTTTATCTGTGCCATCGGTTGACGCAGCAGCTAACTTCACCCAAACAATTATTGACTGTGAACCTGGGCGTTACTTTCAATTTGGTTTTTGGTCTAAGAGTACAACAACCACCCTGGTGTCATTGAGATTCTTGGACCAGCTGGGGAATGCTGTAGCAGATTCCATAGGGTACATCATCCCAGTAGGGAACACGTTCAACTTTTATGCTTTGGTGGATTGCGTTCCGCAAGGAGCTTACAAAGCTGAAATTAATTTCAACGTTTCCTCTGTTGTTGGTGGCGTCGTAATACACAATACCATTTACGGATTGATTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
1e0177baa6d4d7edd6495e1097665c127ff2bdb0a25359250132475e10977f19
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8142
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50