Protein

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Genbank accession
AUR92436.1 [GenBank]
Protein name
tail spike protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MADCSSYPTKSTAQTFKLDAETVNEVVTSSDDRTNPASDGLTKKTLAGIENDASNQLADIQQRADDQYSDINNQYILRNKGDYSTDPLLEFYYEFADFNGLIYFPIVAPYQVDSATYPDPSNDPNLKLGQATDDSLITSTGSTIPRRLDDRFADVVNVKDFGAVGDGVTDDTLAIQFALDSLPELGGLYFPSGDYMVSTMLTCDTNGVMIYGDGRYQSQILPHTTWDGSDALMKLGSGSTWGVKVRDLTFAVTFDELGDDSDGLIIHPWYNFDILNCGFRGGNFVTRETGGLRIMGNALHTRVDTCQLHNGYCYGMIIEGHLNGLHITNCAFDETSVSILSTGNIVELNITGNEFGSAWKNNEYPTPIELINIDLRQGVHASVLIVGNVFEGGVFTEYHARWGEVSSMTINGNSFRSASRYSLVSDSVARPLVIANNTFQSNGADGVTTDPSQGLRDPDTTTFCSDIYINSAFQQPLCISSNVSNISDRPIMWIEGTGNAIASSYANIIGNASKSAGDIAYIHGKYIGKADYVLSGVITTNSIDSYVVSGRTVAAGATEFGNITIEGLVQSGVIDYSNSQTPSGTIFVVEYLSSGFARWKLSNFTDSPISVSDITVNYALR
Physico‐chemical
properties
protein length:621 AA
molecular weight: 67286,60300 Da
isoelectric point:4,35821
aromaticity:0,09823
hydropathy:-0,17279

Domains

Domains [InterPro]
DC_0489
STR
1–619
DC_0489
IPR012334
STR
135–619
IPR012334
IPR011050
STR
153–448
IPR011050
IPR024535
ENZ
156–224
IPR024535
AUR92436.1
1 621
Architecture
STR
STR 1-619 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AUR92436.1
1 621
Domain Start End Length (AA) Confidence
N-terminal 1 171 171 0,9903
Central domain 172 522 352 0,9912
C-terminal 523 621 98 0,9750
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-171
Central
172-522
C-terminal
523-621

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage 1.172.O._10N.261.52.F5
[NCBI] 		1881214 No lineage information
Host Vibrio breoganii
[NCBI] 		553239 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AUR92436.1 [NCBI]
Genbank nucleotide accession
MG592539.1 [NCBI]
CDS location
range 16525 -> 18390
strand +
CDS
ATGGCTGATTGTAGTTCATATCCAACCAAATCAACGGCGCAAACATTTAAGTTAGATGCTGAAACAGTAAACGAGGTTGTTACTTCTAGTGATGATCGCACAAATCCTGCTAGTGACGGGTTAACTAAAAAGACGCTTGCGGGTATCGAGAATGATGCATCAAATCAACTTGCAGATATTCAACAGCGAGCGGATGATCAGTATTCAGACATCAACAATCAGTATATTCTGCGCAACAAAGGCGATTACTCAACAGACCCGCTACTAGAGTTTTACTATGAGTTTGCTGATTTCAATGGGCTGATTTACTTCCCTATCGTTGCCCCGTATCAAGTTGATAGCGCTACATATCCAGACCCATCAAACGACCCTAACTTAAAGCTAGGTCAAGCCACAGATGATAGCCTAATCACATCAACAGGAAGCACTATCCCAAGGAGATTAGATGATCGTTTTGCTGATGTTGTTAACGTTAAGGATTTTGGGGCCGTTGGGGATGGGGTTACAGATGACACTCTGGCAATTCAATTCGCCCTAGACTCACTGCCAGAACTCGGTGGTTTGTACTTCCCTAGTGGGGATTACATGGTATCTACAATGCTTACCTGTGATACCAATGGGGTTATGATATATGGTGACGGGAGATATCAGTCTCAAATACTTCCACACACAACATGGGATGGAAGTGACGCACTAATGAAGCTTGGTAGTGGTTCAACATGGGGCGTAAAGGTTAGAGATTTAACTTTTGCTGTTACTTTTGATGAGCTTGGTGATGACTCGGACGGGTTGATTATTCACCCGTGGTATAATTTCGATATTCTTAATTGCGGGTTTCGTGGCGGTAATTTTGTAACAAGAGAGACTGGCGGCCTGAGAATAATGGGGAACGCACTGCATACTAGGGTTGATACATGCCAACTTCATAATGGTTACTGCTATGGAATGATTATTGAGGGTCATTTAAACGGATTGCATATTACAAACTGTGCATTTGATGAGACTTCTGTATCAATACTCAGCACAGGCAATATCGTAGAACTTAATATAACAGGCAATGAGTTTGGGTCTGCGTGGAAGAACAACGAATACCCAACGCCAATAGAGCTTATCAATATTGATTTAAGGCAAGGCGTTCACGCCTCCGTTTTAATTGTGGGTAATGTTTTTGAGGGAGGGGTGTTTACTGAGTATCACGCCAGATGGGGAGAGGTCTCTTCAATGACAATCAATGGAAACTCATTTAGGAGCGCATCAAGATATAGCTTGGTTTCGGACTCTGTAGCGAGACCTCTAGTTATAGCCAACAACACATTCCAAAGCAACGGAGCTGATGGCGTAACAACTGATCCATCTCAAGGATTGAGAGATCCTGACACCACAACGTTCTGCTCTGATATTTACATAAATTCCGCATTTCAACAACCCTTGTGCATCTCTAGCAATGTATCTAACATCTCAGACAGACCTATCATGTGGATAGAGGGAACAGGCAACGCAATCGCATCTAGTTACGCGAACATAATTGGGAATGCATCAAAAAGCGCTGGTGATATCGCATACATACACGGAAAGTATATTGGTAAAGCTGACTATGTATTAAGTGGAGTCATAACCACTAATTCTATAGATTCATATGTGGTTTCAGGAAGGACAGTAGCCGCTGGCGCGACTGAGTTCGGGAATATAACGATTGAAGGTCTCGTGCAATCTGGAGTTATAGATTACTCAAACTCACAGACTCCAAGTGGCACTATATTTGTCGTTGAATATTTGAGTTCAGGATTTGCCAGGTGGAAGCTTTCAAACTTTACAGACTCACCGATATCAGTAAGTGATATTACTGTAAACTATGCTTTAAGATAG

Genome Context

Genome Context

Tertiary structure

PDB ID
ce3a38beb04b7107755d53a76aa22aa05fd724930eec502986d0c8cde7926f75
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8110
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
A major lineage of nontailed dsDNA viruses as unrecognized killers of marine bacteria Kauffman,K.M., Hussain,F.A., Yang,J., Arevalo,P., Brown,J.M., Chang,W.K., VanInsberghe,D., Elsherbini,J., Cutler,M.B., Kelly,L. and Polz,M.F. 2018-01-24 — GenBank