Protein

View in Explore
Genbank accession
URQ03193.1 [GenBank]
Protein name
long tail fiber proximal subunit
RBP type
TF
Evidence RBPdetect
Probability 0,50
TF
Evidence RBPdetect2
Probability 0,51
Protein sequence
MSEFRRAFRASGLDASGQNVINVANPRVDELLDGINQGYFIDENTVQEYDPSRAHYKVDFIVEFNQRLYKNIIEITAPEPFDPQKWKKMRTDPEWEDTDSSVGANVGDFLLLTASSAITITLPETPLTGDTVTIKDGRGILSTYPCTIAAAGGLTIQSYGINGGIQSDASLSFNRPNSTIYLVYNGIAWTYQIEQQLYHTYLDGSHPSQQGGYLTTGGYFTNVGETVTYEGSVKTIAISLPLHPNVGDTIHLKDVAYIESQTTIQIGVRPTAVGQVVQDPVSGDRSAVISLDTIGGADITFIDDNGTGVWVITIANNPHLWNYVGESSAVTLKPRTRYAIEIADAVSAMTITLPEKPVDGDWIEISHNKTANKPVTVQVHPNFGDDDPGHGPDEYKVFLDFETYRYQKYRHYVDFVPFFVESFDISDYDSGYSFVLYYDGTRKVWSFGNIATRIDIADELHRKRPGIVPLADPTEALAHGIEYAHPEDVAKPWADQSPLKDHVITVETLDARRAAEDQVGMARIATLGVDEALEESRSGALVRYPDSAFRHDIMITPRSLNARTATETRRGVVEIATQTETRSTTNDVQVITPKKFHAAQAEENLTGVAELVKASNNINANGTVASTANMRSDRTVNGVVDTVYDKTDHLRIVTPKMLDEYRATENQPGTLWVAKSTELRVNDSTVDDAIITPKKLAAWKASSTIRGIARSATQAETNAISGTGEAWTTVFVTPETLNSRTATESRRGVAEIATQVEVDAGTDDTRIVTPLKVATWLAYDHFTSDGVAQGAGYGVSGISHTGDIWNGINLEIALATTTQRGTLETATETEAKVQQTWNGTSWDGTAAAADKIVTPLTLDRRRATETQYGIVRRATNAEIDTATIGGVDNTPVYVSPKDLLRWTRTSTNSRSDETRFGVVRLATPAETFVGNSTDGSTQAYTAYLRTPYAVTPYSLHYALRNYLPLNAKADDSELLDGLDSTQFARRDINQTINGTYTFNAKNVEINAGGWLQVQNAPTGDIVKLDWFDSAPRIRVGGSGASSTATFSIQGAADFVRWQVNSSGYTTQASGATFGSTVTENESSANVDATYGTYSSPAAGTLRQKYLGINNVAKAAEKWVTARTVTFTGDLTGNFTIDGSGNVSTNVQVNDNSHNHSGENITSGTISNDRLIKSSRTNPGIVQVTSDVRTADPVNASDPHQALSAGAGKTLSERIDLFTPDGGTGDNVKYRDYIQVGSVRMSTNNQGVLEFTFGHAI
Physico‐chemical
properties
protein length:1256 AA
molecular weight: 136529,09550 Da
isoelectric point:4,98634
aromaticity:0,08201
hydropathy:-0,37301

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage PVA8
[NCBI] 		2938951 No lineage information
Host Vibrio sp.
[NCBI] 		678 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
URQ03193.1 [NCBI]
Genbank nucleotide accession
ON190024 [NCBI]
CDS location
range 139392 -> 143162
strand -
CDS
ATGTCGGAATTCCGCAGAGCATTTCGTGCGTCAGGTCTTGATGCAAGTGGTCAAAATGTAATTAACGTAGCAAACCCACGAGTAGATGAATTGCTCGACGGTATTAACCAAGGCTACTTCATTGATGAAAACACTGTTCAAGAGTATGATCCATCACGAGCGCACTACAAAGTAGATTTCATCGTTGAATTTAACCAACGTCTCTACAAAAACATCATTGAAATCACCGCGCCCGAACCATTTGACCCACAGAAGTGGAAGAAGATGCGTACCGACCCAGAGTGGGAAGATACAGATTCTTCAGTTGGTGCAAACGTAGGTGACTTCTTATTGTTGACAGCTAGTTCAGCAATTACAATTACACTACCAGAAACGCCATTAACCGGCGATACTGTTACAATCAAAGATGGGCGCGGTATTCTATCGACTTACCCATGTACGATTGCAGCAGCAGGCGGTCTAACTATTCAGTCGTATGGCATTAATGGCGGAATTCAATCTGATGCAAGTCTATCATTCAATCGCCCGAACAGTACAATTTATCTTGTGTACAACGGGATTGCATGGACGTATCAAATTGAACAGCAACTATACCACACGTACCTAGATGGCAGCCATCCAAGTCAACAAGGTGGCTATCTAACTACTGGTGGTTACTTTACGAACGTAGGTGAAACTGTCACATACGAAGGTTCAGTAAAAACAATCGCGATCTCTCTACCGCTACACCCGAACGTGGGCGATACAATTCATCTTAAAGATGTTGCATATATTGAAAGTCAAACGACAATTCAAATCGGCGTTCGACCAACAGCAGTAGGTCAGGTTGTTCAAGACCCTGTTTCAGGTGATCGCAGTGCAGTAATCAGCTTAGACACAATAGGTGGAGCTGACATCACGTTTATTGATGACAACGGCACTGGCGTTTGGGTTATCACTATTGCGAACAACCCGCATTTGTGGAACTATGTGGGTGAATCAAGTGCAGTTACGCTAAAACCACGTACTCGTTACGCGATTGAAATCGCTGATGCAGTTAGTGCAATGACAATCACGCTACCAGAAAAACCAGTTGATGGTGACTGGATCGAGATTTCACACAACAAGACTGCGAACAAACCTGTAACAGTTCAAGTTCACCCGAATTTTGGTGATGATGACCCAGGTCACGGCCCAGATGAATACAAAGTATTCTTGGACTTCGAGACTTACCGTTATCAAAAATATCGTCATTACGTCGATTTCGTTCCATTCTTCGTAGAATCGTTCGATATTAGCGACTATGACAGCGGTTACTCATTCGTACTGTACTATGACGGAACTCGTAAAGTATGGTCATTCGGTAACATTGCAACTCGTATCGACATTGCAGATGAACTTCACCGAAAACGTCCGGGTATCGTGCCACTAGCTGACCCAACTGAGGCTCTAGCTCACGGCATTGAATATGCACATCCAGAAGATGTTGCAAAACCATGGGCTGATCAGAGTCCGTTGAAAGATCACGTAATTACCGTTGAAACTTTAGATGCACGTCGTGCAGCCGAAGATCAAGTCGGTATGGCTCGTATCGCGACTCTTGGTGTTGATGAAGCACTTGAAGAATCACGTTCTGGCGCGTTAGTTCGCTACCCAGATAGTGCATTCCGTCATGACATCATGATCACGCCGAGAAGCTTGAACGCTCGTACAGCAACTGAAACACGTCGCGGTGTTGTTGAAATTGCGACACAGACTGAAACACGTAGCACAACTAACGATGTGCAAGTGATCACGCCTAAGAAGTTTCATGCTGCGCAAGCGGAAGAGAATTTAACAGGCGTTGCAGAACTTGTCAAGGCGTCAAACAACATTAACGCTAATGGCACAGTAGCTTCTACTGCAAATATGCGTTCTGACAGAACAGTTAACGGTGTTGTTGATACTGTATATGACAAAACTGATCATCTTCGCATTGTAACTCCAAAAATGCTTGATGAATATCGAGCTACTGAGAACCAACCGGGTACTCTATGGGTTGCTAAGAGCACTGAGCTTCGTGTAAACGACTCAACCGTTGATGATGCAATCATCACGCCTAAGAAATTAGCAGCGTGGAAAGCAAGCTCAACAATTCGCGGTATTGCACGTTCAGCAACTCAAGCTGAAACAAACGCAATCAGCGGAACAGGTGAAGCATGGACAACTGTGTTCGTTACACCTGAGACATTAAACAGTCGTACAGCGACTGAATCTCGTCGCGGTGTTGCTGAGATTGCAACTCAAGTCGAAGTTGACGCAGGGACTGATGATACACGTATCGTTACGCCTCTGAAAGTTGCAACATGGCTTGCATACGATCACTTTACTAGTGATGGCGTTGCTCAAGGCGCGGGTTACGGCGTATCGGGTATCTCACATACAGGTGACATTTGGAACGGCATCAATCTAGAAATCGCACTTGCAACAACAACGCAACGCGGTACTCTAGAAACAGCGACTGAAACAGAAGCTAAAGTTCAGCAAACGTGGAACGGTACGTCTTGGGACGGCACAGCAGCAGCAGCCGATAAAATTGTCACACCATTGACGCTTGATCGTCGTCGTGCAACCGAAACACAATACGGTATTGTTCGTCGTGCAACAAATGCTGAAATTGACACTGCAACAATCGGTGGCGTTGATAACACACCAGTTTACGTATCGCCAAAAGACTTGCTTCGTTGGACTCGTACTTCTACGAATTCACGTTCTGATGAAACACGCTTCGGTGTTGTTCGTCTAGCTACGCCAGCAGAAACATTCGTTGGTAACAGCACTGACGGTTCAACTCAAGCATATACAGCTTACTTGCGTACCCCGTATGCAGTTACGCCGTACAGCTTGCATTATGCATTGCGCAACTACTTGCCATTGAATGCAAAGGCTGATGACTCAGAATTGCTAGATGGTTTAGACAGTACTCAGTTTGCTCGTCGTGATATTAATCAAACGATCAACGGAACTTATACGTTCAATGCTAAAAACGTCGAAATTAATGCAGGTGGCTGGCTTCAAGTACAGAATGCACCGACTGGTGATATTGTTAAGCTAGATTGGTTTGATTCTGCTCCCCGCATTCGCGTCGGGGGAAGCGGTGCATCATCAACTGCTACGTTCTCGATTCAAGGCGCGGCTGATTTTGTTCGCTGGCAAGTTAATTCGTCTGGTTATACTACACAAGCAAGTGGTGCGACTTTCGGTAGCACAGTTACTGAAAACGAATCAAGCGCAAACGTTGATGCAACATACGGGACTTATTCAAGCCCAGCAGCAGGTACACTTCGTCAGAAGTACTTGGGTATCAATAACGTAGCAAAAGCGGCTGAGAAGTGGGTTACAGCGCGTACAGTGACGTTCACTGGCGACTTGACTGGTAACTTCACAATTGACGGAAGCGGAAACGTTTCTACAAACGTGCAAGTTAACGACAATAGTCACAATCACTCAGGTGAGAACATCACGAGCGGTACGATCTCGAACGACCGACTAATCAAGTCAAGTCGTACGAACCCAGGTATTGTTCAAGTAACAAGTGATGTGCGCACAGCAGACCCAGTGAATGCTTCAGACCCACACCAAGCTCTATCGGCTGGTGCAGGTAAGACTCTATCTGAGCGAATTGACTTGTTCACGCCAGATGGCGGTACTGGTGACAACGTTAAATACAGAGACTACATTCAAGTTGGCTCTGTAAGAATGTCAACAAACAATCAAGGCGTGCTGGAGTTCACATTCGGTCACGCAATTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
018ee8cbe478a0b1433697107bccb70f2480f40ca67daf81a03dcea19151620f
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5306
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Characterization of a broad-host-range bacteriophage that prevents Vibrio alginolyticus infections in juvenile turbots farming He,Z. 2023-05-12 — GenBank