Protein

View in Explore

Genbank accession

YP_010053264.1 [GenBank]

Protein name

tail fiber protein

RBP type

Evidence GenBank

Probability 1,00

Evidence Phold

Probability 1,00

TSP

Evidence RBPdetect

Probability 0,82

Protein sequence

MTTNPTNKPIPSEDPRDLKYNAGKIDEFVASLAQQYTDRFGRAHHTIEGLKQLTLQQIYNLGWNLSGSFQDGGTVTSAGDILQDESTNIWYRWDNLKTLPKTVPPGSTPYSSGGTGNGKWMAVDVADVLRKDLAKPTGANLIGIHDTTVGEVLRQKVYIIAITGQSNAVGANRGGPNPANDKIVIWDGATGGWGSSDYTKPPLSRSAPNGNNGNNNIALAFAHRLVDEHKAEKVFIIYDAVGGRPIEDWMANGVNSERYAAIKSKIEAALVSQEIVATGKTEIDFLVFAQGEENSLRDTVTDYKAKLTTLDKQFREESWMSDTTPMFIMGMSGLHMRYQVWQAQVDYCENYNRNCIYVNSAGLKTQYDVDNTGDYTHWLGESLWEHGYYRIWQALHELGVTHRQHLPPFYSRGTGLWKGDSVAISGFTSLVSSGSTTKDFPKDGPAASHAISWGYQCTASNYSLAGGYQNTMNTGANYSVSWGRGNTFSAAAQYSSSFGRENTINAPHAFAAGRGHTIANQNCAALGAFSEYKTSLEDPVMFQVGIGXAAASPKTGFAVFQSGRALFSGNLDFKNDNKHSVGTPSARASVIYSATPSINTSDIATKKVRGALTDAELRAWAKVPPTIFQILESLDEKGDNARLHAGLIAQDVAAAFESEGLDPRRYALFCEDETFEEVLEPQVQTVKRQKRGPGVIKETGIVDGVEVTIERTVNDALQYTLDGNELIPLMEETEETIMTPVRKSKGTRLGLRYIECLIFEAAYQRSIASRLEERLDKLENGD

Physico‐chemical properties

protein length:	782 AA
molecular weight:	85563,37600 Da
isoelectric point:	5,57729
aromaticity:	0,09219
hydropathy:	-0,43163

Domains

Domains [InterPro]

DC_1559
ATT
1–181

DC_1559 DC_0394

G3DSA:2.10.10.80
ATT
63–135

G3DSA:2.10.10.80 IPR036514 IPR011049 IPR036388

IPR040775
RBD
68–123

IPR040775 IPR005181 IPR036388

SSF52266
STR
158–432

SSF52266 cd10144

IPR030392
CHP
601–660

IPR030392

IPR030392
CHP
601–778

IPR030392

YP_010053264.1

1 782

Architecture

ATT

STR

RBD

ATT 1-181 | STR 182-588 | RBD 589-781 |

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Domains [InterPro]

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
DC_1559	ATT	DC_1559	1	181	Novel HMM	DC_1559	N-terminal	Low	Positional only	179 proteins / 179 hits
G3DSA:2.10.10.80	ATT	G3DSA:2.10.10.80	63	135	Merged direct domain	G3DSA:2.10.10.80	N-terminal	Low	Positional only	383 proteins / 383 hits
IPR040775	RBD	DC_0821	68	123	InterPro cluster	Tail spike TSP1/Gp66, N-terminal domain	Central	High	Text match	1281 proteins / 1285 hits
IPR036514	STR	IPR036514	156	404	Merged direct domain	SGNH hydrolase superfamily	Central	Low	Positional only	180 proteins / 180 hits
IPR005181	ENZ	DC_0247	157	381	InterPro cluster	Sialate O-acetylesterase domain	Central	High	Text match	78 proteins / 79 hits
SSF52266	STR	SSF52266	158	432	Merged direct domain	SSF52266	Central	Low	Positional only	227 proteins / 227 hits
DC_0394	RBD	DC_0394	380	623	Novel HMM	DC_0394	C-terminal	Low	Positional only	49 proteins / 49 hits
IPR011049	STR	IPR011049	432	588	Merged direct domain	Serralysin-like metalloprotease, C-terminal	Central	Low	Positional only	81 proteins / 81 hits
IPR036388	RBD	IPR036388	585	781	Merged direct domain	Winged helix-like DNA-binding domain superfamily	C-terminal	Low	Positional only	96 proteins / 96 hits
IPR036388	RBD	IPR036388	589	781	Merged direct domain	Winged helix-like DNA-binding domain superfamily	C-terminal	Low	Positional only	96 proteins / 96 hits
cd10144	CHP	DC_0088	601	767	InterPro cluster	cd10144	C-terminal	High	Text match	3502 proteins / 3959 hits
IPR030392	CHP	DC_0088	601	660	InterPro cluster	Intramolecular chaperone auto-processing domain	C-terminal	High	Text match	3502 proteins / 3959 hits
IPR030392	CHP	DC_0088	601	778	InterPro cluster	Intramolecular chaperone auto-processing domain	C-terminal	High	Text match	3502 proteins / 3959 hits

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout

N-terminal

Central

C-terminal

YP_010053264.1

1 782

Domain	Start	End	Length (AA)	Confidence
N-terminal	1	322	322	0,5015
Central domain	323	522	201	0,7024
C-terminal	523	782	259	0,9821

Note: Constraints were applied during segmentation.
Fixed 119 C-terminal predictions appearing before Central domain

Legend: N-terminal Central domain C-terminal

3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring

N-terminal
1-322

Central
323-522

C-terminal
523-782

Taxonomy

	Name	Taxonomy ID	Lineage
Phage	Salmonella phage vB_SenS_SB28 [NCBI]	2591136	Uroviricota > Caudoviricetes > Macdonaldcampvirus >
Host	Salmonella enterica subsp. enterica serovar Typhi [NCBI]	90370	Bacteria > Proteobacteria > Gammaproteobacteria > Enterobacteriales > Enterobacteriaceae > Salmonella

Coding sequence (CDS)

Genbank protein accession

YP_010053264.1 [NCBI]

Genbank nucleotide accession

NC_054638.1 [NCBI]

CDS location

range 30083 -> 32431
strand +

CDS

ATGACCACCAACCCGACCAATAAACCAATTCCGTCTGAAGACCCGCGAGACCTCAAATATAATGCAGGGAAAATTGATGAGTTCGTCGCGTCATTAGCTCAGCAATACACCGATCGTTTCGGTCGAGCCCACCACACGATTGAAGGGCTTAAACAGCTAACTTTGCAACAGATTTACAATCTTGGATGGAATCTTTCCGGGTCTTTTCAGGATGGCGGGACGGTTACGTCTGCTGGCGACATTCTACAGGATGAAAGCACGAATATTTGGTACAGGTGGGATAATTTAAAAACACTCCCAAAAACAGTCCCACCGGGGTCAACTCCATATTCTTCCGGAGGTACTGGAAATGGAAAATGGATGGCTGTTGATGTGGCTGATGTTCTCCGCAAGGACCTGGCTAAACCAACAGGAGCAAATTTAATTGGAATTCACGATACAACAGTAGGTGAGGTTCTGAGGCAAAAAGTTTACATCATCGCGATCACCGGCCAGTCAAATGCGGTAGGGGCAAACAGAGGTGGTCCAAATCCAGCCAACGATAAAATTGTTATCTGGGATGGTGCAACGGGAGGCTGGGGAAGCAGTGATTATACCAAACCACCATTGTCTCGCTCCGCCCCAAACGGGAATAATGGCAACAACAATATCGCTCTGGCATTTGCACACCGTCTTGTTGATGAGCATAAAGCCGAAAAGGTGTTCATCATCTACGATGCTGTTGGCGGTCGTCCGATTGAGGACTGGATGGCAAACGGTGTCAATTCAGAACGTTACGCTGCAATCAAAAGCAAAATCGAGGCCGCATTAGTCTCTCAGGAAATTGTCGCAACCGGTAAAACAGAAATTGATTTTCTTGTATTTGCACAGGGTGAAGAAAATTCCCTGAGAGATACCGTAACGGATTATAAAGCAAAACTTACAACACTGGATAAACAATTTCGTGAAGAAAGCTGGATGTCTGATACTACACCGATGTTTATCATGGGGATGAGCGGATTACACATGCGCTACCAGGTATGGCAGGCACAGGTTGACTACTGCGAGAATTATAACCGAAACTGCATCTATGTGAATTCTGCCGGGCTAAAAACACAATATGACGTTGATAATACTGGAGATTATACTCACTGGCTGGGAGAGTCATTGTGGGAGCATGGCTATTATCGTATCTGGCAGGCGCTGCACGAGTTGGGTGTTACGCACAGGCAACACTTGCCACCCTTCTATTCCCGTGGGACTGGTCTCTGGAAAGGGGACAGTGTTGCCATCAGCGGGTTTACCAGCCTGGTAAGTTCCGGTTCAACAACCAAAGATTTTCCTAAGGACGGACCAGCCGCCTCGCATGCTATCAGTTGGGGGTATCAGTGTACAGCTTCCAACTATTCGCTGGCTGGCGGCTATCAGAACACCATGAACACTGGAGCTAACTACTCTGTTTCCTGGGGACGTGGAAACACCTTCAGTGCAGCAGCGCAGTACTCATCTTCATTTGGACGTGAAAACACAATTAATGCGCCCCATGCATTCGCTGCCGGACGTGGGCATACAATCGCTAACCAGAACTGTGCGGCGCTGGGGGCATTTTCTGAATACAAAACGTCACTCGAAGATCCGGTGATGTTTCAGGTGGGGATAGGAASAGCTGCCGCGTCACCAAAAACTGGTTTTGCCGTGTTTCAATCAGGGCGCGCTCTGTTTTCAGGTAATCTCGATTTCAAAAATGACAACAAACACTCCGTTGGCACTCCTTCTGCGCGTGCGTCTGTAATTTATTCGGCGACACCAAGCATCAACACATCAGATATTGCGACCAAAAAAGTGCGTGGAGCTTTAACCGATGCTGAATTACGGGCATGGGCTAAGGTGCCGCCGACAATTTTCCAGATTCTTGAATCACTGGATGAAAAGGGTGATAACGCGCGACTGCACGCAGGTCTGATTGCGCAGGATGTTGCGGCGGCTTTTGAATCCGAAGGACTGGACCCGCGACGTTACGCTCTGTTCTGCGAAGACGAAACGTTTGAAGAGGTGCTCGAACCACAGGTTCAGACAGTAAAACGTCAGAAACGCGGCCCCGGCGTTATCAAAGAAACTGGCATTGTCGACGGAGTGGAAGTTACAATTGAGCGCACCGTAAACGACGCGCTCCAGTACACGCTGGATGGAAACGAACTCATCCCGCTGATGGAGGAGACAGAAGAAACAATAATGACTCCCGTTCGTAAATCAAAGGGTACTCGTCTTGGTTTGCGTTATATAGAGTGCCTTATTTTTGAGGCTGCGTATCAGCGTTCAATAGCCTCAAGGCTTGAAGAACGCCTTGATAAACTAGAGAATGGCGATTGA

Genome Context

Tertiary structure

PDB ID

c1552206018d2ba48764a5e5f0755ba8b8173b0cc0083a2e1e56a29978edeee5

ColabFold

Source ColabFold

Method ColabFold

Resolution 0,8299

Oligomeric State monomer

Download PDB

Model Confidence

Very high
pLDDT > 90

High
90 > pLDDT > 70

Low
70 > pLDDT > 50

Very low
pLDDT < 50

Literature

Title	Authors	Date	PMID	Source
Whole genome sequence analysis of broad host range Salmonella enterica bacteriophages	Bhandare,S.G., Colavecchio,A., Emond-Rheault,J.-G., Hamel,J., Kukavica-Ibrulj,I., Boyle,B., Levesque,R.C. and Goodridge,L.	2024-03-29	—	GenBank

Protein

Domains

Domains [InterPro]

Domains [InterPro]

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

3D Structure with Domain Coloring

Domain Coloring

Taxonomy

Coding sequence (CDS)

Coding sequence (CDS)

Genome Context

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)

Model Confidence

Literature