Protein

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Genbank accession
ABV74286.1 [GenBank]
Protein name
tail spike protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MAVAMIGPKFYAWDRNGKPLAFGKLYTYEARTNVPKDTYKSEDQITPNTNPVILNGEGYADVYLDGSYKMVLKDDKDNEIWSSDPVTANQAQEWINCFAATYISSTSFRLSGNQTDRYTQDRRVRIDNGTTEYAYSTIVSSSYAAGETSVTIKDAVITTGLNSTCTSVVSDKSSFNGVDSGSYSGFVFKTVDDMKAGITLRDGEVDLFRNAKATTLGYYEEGDGGGAEYLIVQGGSGTDDGGQFHDLNNGNQAKLLPKEIHSVGVFGVYLDASITSTVEMQAAIDSGLNIIVPFGATVISRSLVAKSGMRLTIDGLLKSSPSIGSFPLISGDSIDDMIISGKGIIDGNKGNVGSVDSPGIKITNITNSSVQDITIKDCFIATDPGINGCGLWFEGGSDCFAYNVKAINNTGNGIVFGNMNDSYTANCVGSNNLNGSGIAHTRGLRAKSLNDYANGNTFSNITVNCVDSQITDPISIGSGFAGINIGHDNEASDASRTVLRGGVTRDNNFEGVTIAGSTEVSVIGTNISNNGSNGGANDRHGIRLLNNSFRCSFIDVLVTESKNSGISVESGSVKIIKTYFL
Physico‐chemical
properties
protein length:581 AA
molecular weight: 61571,42920 Da
isoelectric point:4,76802
aromaticity:0,08090
hydropathy:-0,20757

Domains

Domains [InterPro]
DC_2164
STR
1–370
DC_2164
IPR012334
STR
262–536
IPR012334
IPR011050
STR
272–546
IPR011050
ABV74286.1
1 581
Architecture
STR
STR 1-546 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
ABV74286.1
1 581
Domain Start End Length (AA) Confidence
N-terminal 1 277 277 0,8071
Central domain 278 570 294 0,9959
C-terminal 571 581 10 0,1674
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-277
Central
278-570
C-terminal
571-581

Taxonomy

  Name Taxonomy ID Lineage
Phage Thalassomonas phage BA3
[NCBI] 		469660 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Thalassomonas loyana
[NCBI] 		280483 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Alteromonadales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
ABV74286.1 [NCBI]
Genbank nucleotide accession
EU124666.1 [NCBI]
CDS location
range 103 -> 1848
strand -
CDS
ATGGCTGTAGCAATGATAGGCCCAAAGTTTTACGCTTGGGATAGAAACGGCAAACCTCTTGCTTTCGGTAAGCTTTACACTTACGAAGCCAGAACAAATGTACCTAAAGATACTTATAAATCAGAAGATCAAATAACACCTAACACTAACCCGGTTATTTTAAACGGCGAAGGTTATGCTGATGTTTATCTTGATGGCTCTTATAAAATGGTTCTTAAAGATGATAAGGACAATGAAATATGGAGCTCTGATCCTGTAACAGCTAACCAAGCGCAGGAGTGGATTAATTGTTTTGCTGCCACTTACATTAGCTCCACTTCATTCAGGCTGAGCGGTAATCAAACTGACAGATATACTCAAGACAGAAGAGTTAGGATTGACAACGGAACTACCGAATATGCTTACAGTACAATTGTTAGCTCTAGCTATGCCGCTGGTGAAACCTCAGTAACAATAAAAGACGCTGTTATTACCACTGGATTGAATAGCACTTGTACTTCTGTTGTTAGCGACAAATCAAGCTTTAATGGTGTGGATTCAGGCTCCTATTCGGGTTTTGTCTTCAAAACCGTCGATGATATGAAGGCCGGAATAACTCTAAGAGATGGCGAAGTTGATCTTTTTAGAAATGCTAAAGCTACAACTCTTGGGTATTATGAAGAAGGTGATGGCGGTGGTGCTGAATATTTGATTGTGCAAGGTGGTTCTGGCACTGATGACGGTGGACAATTCCATGATTTAAACAACGGAAATCAGGCTAAACTACTTCCTAAAGAAATACATTCAGTTGGTGTTTTTGGTGTTTACCTTGATGCTTCTATTACTTCAACCGTTGAAATGCAAGCCGCCATTGATAGTGGATTAAATATAATTGTTCCTTTTGGAGCAACTGTAATATCTAGGTCTTTAGTGGCTAAATCAGGAATGAGATTAACTATAGATGGATTGTTAAAATCTAGCCCTTCAATTGGCTCTTTTCCTTTGATTAGCGGTGATTCTATAGATGATATGATTATTTCTGGTAAAGGGATAATTGACGGAAACAAAGGAAATGTTGGAAGTGTTGATTCCCCGGGAATAAAAATAACAAATATCACAAACTCAAGCGTACAAGATATTACAATCAAGGATTGTTTTATTGCTACCGACCCCGGAATAAACGGTTGTGGATTATGGTTTGAAGGTGGTTCTGATTGCTTTGCTTACAATGTCAAGGCAATTAATAACACTGGTAACGGAATTGTTTTTGGTAACATGAACGACTCTTATACTGCTAATTGTGTAGGCTCTAATAACCTTAACGGTTCAGGTATAGCGCACACTAGAGGTTTAAGAGCTAAGTCATTAAATGATTATGCTAACGGAAATACATTTTCTAACATAACGGTAAACTGTGTTGACAGCCAAATAACAGATCCTATTAGTATTGGGAGCGGATTTGCTGGCATTAACATTGGTCACGACAATGAAGCTTCGGACGCAAGCCGGACAGTTTTACGAGGCGGCGTAACAAGAGATAACAATTTTGAAGGTGTAACTATTGCAGGCTCAACAGAAGTAAGTGTAATTGGTACAAATATTTCAAACAATGGTAGTAATGGCGGAGCTAATGATCGACATGGAATAAGACTACTAAACAACTCTTTTAGATGTTCTTTCATTGATGTTCTTGTAACAGAGTCAAAAAACTCTGGCATATCAGTTGAATCAGGGAGCGTTAAGATCATTAAAACGTATTTTTTGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
020279e6bbad79ec03184571e95f842b937d8deceb3c670d7f72e34568ec9b84
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8675
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Phage therapy of coral disease Efrony,R., Loya,Y., Bacharach,E. and Rosenberg,E. 2007 — GenBank
Parameters affecting phage therapy of coral disease Efrony,R. and Rosenberg,E. 2006-11-24 — GenBank