Protein

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Genbank accession
XKC24425.1 [GenBank]
Protein name
receptor-binding protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,88
Protein sequence
MGFFAGKYSDGKTVLSLNTESGGDINRHYSPNANSIFHSDMPFVLVDGTYEAGLGNAGNGFFVCQMPSDIINIKSNDPGRVILTAIEINGTHRAFLNGTQSKVGQTIVATQADPFRSFASVSQTSGFAFGNSLASGTYNYNPSIGHEESISRNGTGGTTLHSTYHGIVRPGAGAPVGITVAEAFAQLGFPTNSSTVPIDGNNQYYWDPGWMSPLGSAHRGHDWFYVCNSNIRGYGGVRQGLPGNVNTMYHDGGNRFVCRGSTTNLANQSGNATILQDWYNITPTKVIWYVLNLRYSNGNMGISGNPFTGSDILISPSNFTIKGVSLPNTGYKFINQNAFGNLGYRPDMEFIGNNAAYTGAFGDTTARCELVGSSNGGLWSPVDYGGAKSQISIYKFGAGKQWYVNSSNNTIGNEHGVVWGPSSVPLRLFSGNVGSSYMGDDITPYYPGTGDRYVALSTIGLGIPGGNATVILTTEVISGNLNCAGVPANTWNNGVFQVQGRRAYSYSNGDAIFHQILTLPVGYLVPFHTTSAFRYTPNNALSRNSFIYTVKNLGNGNVELGVVMHVSLGSAVFLPRLRVTVQRLT
Physico‐chemical
properties
protein length:585 AA
molecular weight: 62537,84730 Da
isoelectric point:8,42300
aromaticity:0,11453
hydropathy:-0,17863

Domains

Domains [InterPro]
IPR059609
RBD
1–585
IPR059609
XKC24425.1
1 585
Architecture
RBD
RBD 1-585
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XKC24425.1
1 585
Domain Start End Length (AA) Confidence
N-terminal 1 10 10 0,0518
Central domain 11 209 200 0,4365
C-terminal 210 585 375 0,8374
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-10
Central
11-209
C-terminal
210-585

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage HMD-P4
[NCBI] 		3374742 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Escherichia coli
[NCBI] 		562 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XKC24425.1 [NCBI]
Genbank nucleotide accession
PQ462666 [NCBI]
CDS location
range 103740 -> 105497
strand -
CDS
ATGGGTTTTTTCGCTGGAAAATATAGCGATGGTAAGACCGTACTATCTTTAAATACTGAATCTGGTGGTGACATTAATCGTCACTATAGTCCAAATGCTAATAGTATTTTTCATAGTGATATGCCATTTGTCCTAGTTGATGGCACTTATGAGGCTGGATTAGGAAATGCTGGAAATGGGTTTTTTGTATGTCAGATGCCCTCTGACATAATAAATATTAAATCCAACGACCCAGGTAGAGTTATACTAACTGCTATTGAGATTAATGGTACTCATAGGGCTTTTCTTAATGGTACTCAGAGTAAGGTGGGTCAAACTATAGTTGCTACTCAAGCAGACCCCTTTAGATCTTTTGCTAGCGTTTCCCAAACTAGTGGATTTGCATTTGGTAATAGCCTGGCATCTGGAACATATAACTATAACCCATCTATAGGGCATGAAGAATCTATCTCTAGAAATGGTACTGGTGGAACCACCCTACATAGTACTTATCATGGTATAGTTAGGCCTGGTGCAGGAGCTCCGGTAGGTATTACTGTTGCAGAGGCTTTTGCACAGTTAGGATTCCCTACTAATAGTAGTACAGTACCTATAGATGGGAATAACCAATATTACTGGGACCCAGGGTGGATGTCTCCTTTAGGATCGGCACATAGGGGGCACGATTGGTTCTATGTTTGTAACTCTAACATACGTGGGTATGGTGGGGTAAGACAAGGTCTTCCTGGTAATGTAAATACTATGTATCATGATGGGGGTAATAGATTTGTTTGTAGAGGTTCTACAACTAATTTAGCTAATCAATCTGGTAATGCTACAATACTACAGGATTGGTATAACATAACTCCTACTAAGGTTATTTGGTATGTACTTAATCTGAGGTATTCCAATGGTAATATGGGTATTTCTGGTAATCCTTTTACTGGTTCAGATATTCTTATCTCTCCCTCTAATTTTACTATAAAAGGGGTTAGTTTACCGAATACTGGATATAAGTTTATCAACCAAAATGCTTTTGGTAACTTAGGCTATAGGCCAGATATGGAATTCATCGGAAATAACGCAGCGTACACCGGAGCCTTCGGAGATACCACTGCAAGGTGTGAGCTTGTAGGTTCTAGCAACGGGGGTTTATGGTCTCCTGTAGATTACGGAGGGGCTAAGTCTCAAATTAGTATTTACAAATTCGGAGCTGGTAAGCAATGGTACGTAAACTCAAGTAATAATACTATTGGTAACGAACATGGTGTTGTTTGGGGGCCTTCTTCAGTTCCTCTGAGACTTTTTAGTGGAAATGTTGGTAGTTCTTACATGGGAGATGATATTACCCCTTACTACCCCGGAACTGGAGATAGATACGTGGCTCTATCTACTATTGGACTAGGAATTCCAGGAGGTAATGCTACCGTTATTCTTACTACTGAAGTTATATCTGGTAATCTTAATTGTGCTGGTGTTCCAGCTAATACATGGAATAACGGTGTATTTCAGGTGCAGGGAAGAAGGGCTTATAGCTATAGTAATGGAGATGCAATATTCCACCAGATTTTAACATTACCTGTAGGTTACTTAGTACCATTTCATACTACATCTGCATTTAGATACACACCTAATAATGCACTAAGTAGAAATAGTTTCATATATACAGTTAAAAATCTAGGAAATGGAAATGTAGAGTTAGGGGTAGTTATGCACGTAAGTTTAGGTAGTGCAGTTTTCCTACCTAGATTAAGAGTAACAGTTCAACGCCTTACCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
c1f3ea73a0eabfd3aac0303d6618d1841b4a3f5a23288e2c30ce02cdfb9f0742
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,2411
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50