Protein

View in Explore
Genbank accession
YP_004322190.1 [GenBank]
Protein name
tail fiber protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,89
TF
Evidence RBPdetect2
Probability 0,65
TF
Evidence UniProt/TrEMBL
Probability 1,00
Protein sequence
MGAQGYIGRSPGDSSNIIARQTYTPTGITTDFTFASTYSVGYIDVYLNGVRLVEGNDFTATDGSVVGLTTHAQNGDIIELVAYKAFNATNVTAANNNFSVGGNLSVTGVSTFTGAITATGGITGAVTGDATGLTGTPDITIRNLTGVAATFTGVLSYDDVTNVDSVGYATFRSGINVQGAGSTTTTLNVSGVTTMTGDANFGSVLNIDDSIVHSGDSNTKIRFPAADTFTVETGGSERLRVTSAGNLGIGTVDPASDLQVASYGDHGKIRVESSGDGNRAGVEFFRESSAGTGKGAAGIWVESETGNSSGELRFGTASNASLQSFQTRMILDSSGDLGIGTDNPSAKLHVENNAANATIARFESNMGTNNNRGISIKSPVSDSASEPFIFDTGNAYQFQCDSTSALHINFDRNIGINTDNPLQKLHLVDDTSANIYLQTHNTSIGSSAGVYFRTSNSSTQDGFFKSAIVLEDDGTSHARGKLHILQDNTADSSNATLVDSVVTITQSGSVGIGTTVPQEQLHIFGTSDFVVDTDSATLRFGSYGEHDIALVTGRNTSAGSSRLYIENGDGEALRIDSNGQIGIGTDDPQQFVHIHDEGNSGIVTTRIQQVSSNTPTDGGAFLQLGGTRSNGTFGHYGGIFGGRRNQAGDNTGYLALHVDNNDGASMSERVRITHQGRIGIGTESPDGFLVIQGNSNDSTVPSIRLQDGTDARQVSITNNSGDFVVATHGVDNSHHGQIKIFEGGQISLLNGGASGSLTERLRIATDGSVTKPTNPLFKSNMGAVYGSGGSLITSPSTAILQSAAEIDVGNTSWTTSGSNAYTFVCPVAGVYAVHAHMSLDDISEGNRVIFVIGYTAGGGNLPLSSYVEVMDTNVHDYQNYSYYNTWNFSAGTRIGFGINSGSGGTLSGFNSQWGIHLLQ
Physico‐chemical
properties
protein length:919 AA
molecular weight: 95646,89720 Da
isoelectric point:4,76700
aromaticity:0,07399
hydropathy:-0,22057

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_004322190.1
1 919
Domain Start End Length (AA) Confidence
N-terminal 1 127 127 0,9081
Central domain 128 326 200 0,2656
C-terminal 327 919 592 0,9288
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-127
Central
128-326
C-terminal
327-919

Taxonomy

  Name Taxonomy ID Lineage
Phage Synechococcus phage S-SM2
[NCBI] 		444860 Uroviricota > Caudoviricetes > Pantevenvirales > Nilusvirus > Nilusvirus ssm2
Host Synechococcus sp. WH 8017
[NCBI] 		166321 Bacteria > Cyanobacteria > Oscillatoriophycideae > Chroococcales > Synechococcus >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_004322190.1 [NCBI]
Genbank nucleotide accession
NC_015279.1 [NCBI]
CDS location
range 34045 -> 36804
strand +
CDS
ATGGGAGCACAAGGATATATCGGAAGATCACCAGGTGACTCGTCTAATATCATTGCGAGGCAGACATACACTCCGACGGGTATTACCACTGATTTTACCTTTGCATCTACATATTCAGTTGGATATATTGATGTATACTTAAATGGTGTAAGGTTAGTAGAAGGTAATGATTTTACTGCAACCGATGGATCTGTTGTTGGTCTAACAACTCATGCTCAGAATGGTGATATTATTGAGTTAGTCGCATATAAAGCATTTAACGCTACAAATGTTACTGCGGCAAATAATAATTTCTCTGTCGGTGGAAATCTATCAGTTACTGGTGTATCAACTTTTACTGGTGCAATCACTGCAACTGGTGGAATAACTGGTGCTGTAACTGGAGATGCAACAGGTCTTACTGGAACACCAGACATAACGATTAGGAATCTTACTGGTGTTGCAGCAACATTTACTGGAGTTTTGTCATATGATGACGTAACCAACGTTGATTCTGTTGGTTATGCAACGTTCAGAAGTGGTATCAATGTTCAGGGTGCTGGTTCAACTACAACCACTCTGAATGTTTCTGGTGTCACCACAATGACTGGTGATGCTAATTTTGGAAGTGTTCTCAATATTGATGATTCAATTGTTCATAGTGGAGATAGTAATACGAAGATTAGATTCCCTGCTGCTGATACATTTACAGTAGAGACTGGTGGTAGTGAGAGACTTCGTGTAACTTCTGCTGGTAATCTTGGTATCGGAACCGTCGATCCAGCATCAGATTTACAAGTTGCATCATATGGCGATCACGGTAAGATTCGTGTAGAAAGTTCTGGAGATGGTAATAGGGCAGGTGTTGAATTTTTTAGAGAATCAAGTGCTGGAACTGGAAAAGGTGCAGCAGGTATTTGGGTAGAATCTGAAACTGGAAATTCATCTGGTGAGTTGAGGTTTGGAACTGCATCTAATGCAAGTTTACAATCATTTCAGACCAGAATGATTCTGGATTCAAGTGGTGATCTCGGTATCGGGACTGATAATCCGAGTGCAAAACTGCACGTAGAAAACAATGCAGCTAATGCGACTATTGCAAGGTTTGAGTCCAATATGGGCACAAACAATAATAGGGGAATCTCTATAAAATCTCCAGTATCAGATAGTGCATCTGAACCTTTTATATTTGATACCGGAAATGCTTATCAATTTCAATGTGATAGCACAAGTGCACTTCATATTAATTTTGATAGAAATATTGGCATCAACACCGATAATCCACTACAAAAACTACACTTAGTAGATGATACTTCCGCAAACATTTATCTTCAAACACACAATACAAGTATTGGATCTTCAGCGGGAGTTTATTTTAGAACGAGTAATAGTTCTACTCAGGATGGATTTTTTAAATCAGCAATTGTTTTAGAGGATGACGGTACTTCTCATGCAAGAGGAAAATTACACATCCTGCAAGATAATACTGCTGATAGTTCTAATGCAACATTAGTTGATTCTGTCGTAACGATTACTCAAAGTGGTAGTGTCGGCATTGGGACCACCGTTCCACAGGAACAACTACACATTTTTGGAACATCAGACTTTGTTGTTGATACTGATTCTGCTACATTAAGGTTTGGAAGTTATGGTGAACATGATATTGCTTTAGTAACCGGAAGAAATACTTCAGCTGGTTCATCAAGACTTTATATTGAAAATGGAGATGGTGAAGCACTTCGTATTGATTCTAATGGCCAAATCGGTATCGGAACCGATGATCCGCAACAATTTGTACACATTCATGATGAAGGTAATTCTGGTATTGTAACTACAAGAATTCAGCAAGTAAGCTCCAACACTCCAACAGACGGTGGTGCATTTTTACAACTTGGAGGAACAAGGTCAAATGGTACATTTGGTCATTATGGAGGAATCTTTGGTGGAAGAAGAAATCAGGCTGGTGATAACACTGGTTACTTAGCACTCCACGTTGATAATAATGATGGAGCATCCATGAGTGAGAGGGTTCGTATAACTCATCAAGGCCGAATCGGTATTGGAACTGAATCACCTGATGGATTTCTTGTCATACAAGGAAATTCTAATGATTCAACCGTTCCTTCTATTCGATTACAAGACGGTACAGATGCAAGACAAGTTTCAATTACAAATAATTCTGGAGATTTTGTAGTAGCGACTCACGGAGTTGATAATAGTCACCATGGACAAATAAAAATATTTGAAGGCGGACAAATTTCATTACTTAATGGAGGTGCATCTGGTTCATTAACAGAAAGATTACGTATAGCCACTGATGGTTCCGTCACAAAACCAACCAACCCATTGTTCAAAAGTAATATGGGTGCCGTATATGGAAGTGGTGGATCTTTGATCACAAGCCCGTCAACTGCAATTTTACAATCAGCTGCTGAAATTGACGTAGGTAATACAAGTTGGACAACTTCAGGATCTAATGCATATACTTTTGTGTGTCCTGTAGCTGGAGTTTATGCAGTTCATGCTCACATGTCTTTAGATGATATTTCTGAAGGTAATAGAGTTATTTTTGTAATAGGATACACTGCTGGCGGTGGTAATCTTCCATTGTCTTCTTATGTTGAAGTAATGGACACAAATGTTCATGATTACCAAAACTATAGTTACTATAACACTTGGAATTTCTCTGCGGGAACAAGAATCGGTTTTGGCATAAACTCCGGCTCTGGTGGAACTTTGTCTGGATTTAATTCACAATGGGGCATTCATCTGCTTCAGTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
5fede8e8527bd14b887cdd36d99eb9fcb718a9cba4df13fd8517fb9411cb0b49
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6487
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Genome Sequence of Cyanophage 8017-1 Henn,M.R., Sullivan,M.S., Osburne,M.S., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Erlich,R., Young,S.K., Koehrsen,M., Yandava,C., Zeng,Q., Alvarado,L., Anderson,S., Berlin,A., Borenstein,D., Chen,Z., Engels,R., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heiman,D., Hepburn,T., Howarth,C., Jen,D., Larson,L., Lewis,B., Mehta,T., Park,D., Pearson,M., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., Walk,T., White,J., Yu,Q., Coleman,M.L., Huang,K.H., Weigele,P.R., DeFrancesco,A.S., Kern,S.E., Thompson,L.R., Fu,R., Hombeck,B., Chisholm,S.W., Haas,B., Nusbaum,C., Galagan,J. and Birren,B. 2011-09-23 — GenBank