Protein

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Genbank accession
YP_001165268.1 [GenBank]
Protein name
baseplate spike
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MDTADLARLLENLLRLGTIAEIRHSTPPAVRVRTGGITTTWRPWAERRAGRTRTWNPPTVGEQVLLFCPSGDTANAVILCGIPTDDNDVPSNDPNQTVTLYPDGALTSYDHAAGLLSVQGVKTVFLEATANVLVKAPNTTFDGDVTVKGRFAYENGIAGQGGENGNKITGSLTHEGGQLSSNGVVLDKHDHGGVQHGGDWTEGTR
Physico‐chemical
properties
protein length:205 AA
molecular weight: 21753,85960 Da
isoelectric point:5,44469
aromaticity:0,05366
hydropathy:-0,37415

Domains

Domains [InterPro]
IPR037026
ATT
1–87
IPR037026 G3DSA:6.20.150.10 IPR044033
IPR037026
ATT
1–85
IPR037026
IPR013046
Unmapped
6–203
IPR013046
IPR006531
STR
16–81
IPR006531
DC_1459
STR
68–205
DC_1459
YP_001165268.1
1 205
Architecture
ATT
STR
ATT 1-87 | STR 88-205
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_001165268.1
1 205
Domain Start End Length (AA) Confidence
N-terminal 1 91 91 0,7444
Central domain 92 194 104 0,0203
C-terminal 195 205 10 0,9943
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-91
Central
92-194
C-terminal
195-205

Taxonomy

  Name Taxonomy ID Lineage
Phage Ralstonia phage RSA1
[NCBI] 		2993856 Uroviricota > Caudoviricetes > Peduoviridae > Aresaunavirus RSA1 >
Host Ralstonia solanacearum
[NCBI] 		305 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Betaproteobacteria > Burkholderiales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_001165268.1 [NCBI]
Genbank nucleotide accession
NC_009382 [NCBI]
CDS location
range 13397 -> 14014
strand +
CDS
ATGGATACCGCAGACCTCGCCCGCCTTCTCGAAAACCTCTTGCGCCTCGGCACCATCGCCGAGATACGCCACAGCACGCCGCCGGCCGTGCGCGTGCGCACCGGGGGCATCACCACCACCTGGCGCCCCTGGGCCGAGCGCCGCGCCGGCCGGACGCGCACCTGGAACCCGCCGACCGTGGGCGAGCAGGTGCTGCTGTTCTGCCCCAGCGGCGACACGGCCAACGCCGTCATCCTGTGCGGCATCCCGACCGACGACAACGACGTTCCGAGCAACGACCCCAACCAGACAGTCACGCTCTATCCGGATGGCGCACTCACCAGCTACGACCACGCCGCCGGCCTGCTGAGCGTGCAGGGCGTCAAGACGGTGTTCCTGGAGGCCACCGCGAATGTGCTGGTGAAGGCGCCAAACACCACCTTCGACGGCGACGTGACTGTCAAAGGCCGATTCGCGTACGAGAACGGCATCGCCGGCCAGGGCGGCGAGAACGGCAACAAGATCACCGGCAGCCTGACGCACGAGGGCGGCCAGCTGTCGTCCAACGGCGTAGTCCTGGACAAGCACGACCACGGCGGCGTGCAGCACGGCGGCGACTGGACGGAGGGCACGCGGTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
f8f1b7aa900ae722b9b9b5d6310b8a23b2df74f348ff59841753f4d976ee9a0e
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8786
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The complete nucleotide sequence of RSA1, a temperate phage of Ralstonia solanacearum: implications for phage evolution Fujiwara,A., Kawasaki,T., Fujie,M., Usami,S. and Yamada,T. 2009-01 — GenBank