Protein

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Genbank accession
AUR89388.1 [GenBank]
Protein name
tail spike protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MPDVQPTNNPVPSDNPADARDNFKRIDEVVNSTENLTSPTRTGVQLVTLHRYNELVQPNIDGARESAAEAAASAAAAESAASGLNYQGLWPDSGGGADKGDTYQTQVGGTPTGLYFTALQDTTVAPTSDNINWRLVISNRSLGGITNYQASSVANMIAGTPLNMNPISIAIGQVWSTGLGSWEVVNETLPVNQDNFRALNVVSVGDFGAVGDGDKVAHTGTDNTSAFRSAVTAARKRNSLVYIPPAESGKGFVINDTIFFGPEKQSDVDTFPPNNVCLGIVGDNDESSVVICGNGLAGKVVFDYTGLGHKFAKDFTIWRNIEANAPSIGILTARFINGSGVTGNYGGVFSDVTMFKFFTIAGRLAITTEETREERINIRNDHSDSYGCFVSTSDGSSESYASGPTWNSLLGEQSQSTLLRENTPGSNLHQTHVKCDYYYGNNTPDSSKNPAMLRIDGANGFSIRDPFFNNNTTLIDCVQIRRAGADGVPSAISVINPLYHQQTKSGVRVMTGLNRLDLEQSSTLPGFTFSEAELVIDGFLSGATVEAVNSVIQNEAIEDCTFSYVAASFNQSNTITNCELEAIGTYNQTDNSAISNTKITCKEFTWNTDSSITNTDITVRNNLNALGSRGGSPKFFLTYRGSQYAIEGQIPSGWLGTPSGINQDALSYSTTNLRTNQTLYSRATNQIAQRIEIENTGYNSSMTQYIAPSGIGQDFNYINCVRGGAQEAALLRNGVMVHYLNTGGTVLTSPNGSRHRIIVDDSGNLSTVSY
Physico‐chemical
properties
protein length:770 AA
molecular weight: 82505,86990 Da
isoelectric point:4,79536
aromaticity:0,08182
hydropathy:-0,31104

Domains

Domains [InterPro]
DC_1559
ATT
1–168
DC_1559 IPR011050 DC_1426
DC_0685
STR
200–260
DC_0685
AUR89388.1
1 770
Architecture
ATT
STR
ATT 1-168 | STR 198-770
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AUR89388.1
1 770
Domain Start End Length (AA) Confidence
N-terminal 1 216 216 0,9896
Central domain 217 621 406 0,9835
C-terminal 622 770 148 0,9466
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-216
Central
217-621
C-terminal
622-770

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage 1.122.B._10N.286.46.F8
[NCBI] 		1881250 No lineage information
Host Vibrio cyclitrophicus
[NCBI] 		47951 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AUR89388.1 [NCBI]
Genbank nucleotide accession
MG592497.1 [NCBI]
CDS location
range 23856 -> 26168
strand +
CDS
ATGCCAGACGTACAACCAACAAATAACCCAGTGCCAAGCGACAACCCCGCTGACGCCAGAGATAACTTCAAGCGCATTGATGAGGTTGTGAATAGCACTGAAAACCTGACCAGCCCAACAAGAACAGGCGTTCAGTTAGTTACTCTTCATAGATACAATGAGCTTGTTCAGCCTAATATAGATGGCGCGAGAGAGTCGGCAGCGGAAGCAGCAGCAAGCGCAGCGGCAGCAGAATCCGCGGCTTCTGGGTTGAATTATCAAGGATTATGGCCAGACTCTGGAGGAGGTGCTGACAAAGGTGACACGTACCAGACTCAAGTAGGTGGAACACCAACAGGTCTATATTTTACCGCCCTGCAAGATACAACTGTAGCGCCAACTAGCGATAATATTAACTGGCGATTAGTGATTAGCAATCGGTCTTTAGGTGGTATTACAAATTACCAAGCATCTAGCGTAGCGAACATGATCGCCGGAACTCCATTAAACATGAATCCAATTTCTATTGCAATTGGGCAAGTGTGGAGTACGGGGCTTGGGAGTTGGGAGGTGGTCAACGAAACTCTACCTGTCAATCAGGACAACTTTAGAGCTTTGAACGTTGTTAGCGTGGGTGATTTCGGTGCTGTTGGCGACGGTGACAAGGTAGCTCACACAGGGACGGATAATACAAGCGCTTTTAGATCTGCAGTTACAGCAGCAAGAAAAAGAAACTCATTAGTGTACATCCCTCCCGCCGAGTCTGGTAAGGGGTTTGTTATAAATGACACTATATTCTTCGGCCCAGAAAAACAAAGTGATGTAGACACATTTCCGCCAAACAATGTATGCCTTGGTATCGTGGGTGATAACGATGAATCAAGCGTTGTTATTTGCGGCAACGGTCTAGCAGGAAAGGTTGTTTTTGATTACACAGGGCTAGGTCATAAGTTTGCGAAAGACTTTACCATTTGGAGAAATATCGAAGCTAACGCTCCTTCAATTGGAATACTTACAGCAAGGTTCATAAATGGCTCTGGAGTCACTGGCAACTATGGCGGTGTGTTCTCTGATGTAACAATGTTTAAGTTCTTCACTATAGCGGGAAGACTGGCGATCACTACAGAAGAAACTAGAGAAGAAAGAATAAACATAAGAAACGATCACTCTGACTCTTATGGTTGTTTTGTTTCGACCTCTGACGGCTCTAGTGAGTCTTATGCGTCAGGCCCGACTTGGAATTCGCTATTGGGTGAGCAGTCGCAAAGTACGCTTTTACGTGAAAACACTCCCGGAAGTAACCTGCATCAAACTCATGTTAAGTGTGATTATTATTATGGAAACAATACGCCAGATTCATCGAAAAATCCTGCGATGCTTAGAATTGATGGAGCTAATGGTTTCTCAATACGCGACCCGTTTTTCAATAACAACACTACTCTTATTGATTGCGTTCAAATACGAAGAGCTGGAGCGGACGGCGTTCCGTCTGCAATATCAGTGATAAACCCGCTTTACCACCAGCAAACAAAAAGCGGCGTAAGGGTTATGACCGGACTAAACAGGCTAGACCTTGAACAATCCAGCACATTGCCCGGCTTTACTTTTAGCGAAGCTGAGCTGGTTATTGATGGGTTCCTTAGCGGGGCCACGGTTGAAGCTGTAAACAGTGTAATCCAGAATGAAGCAATTGAGGATTGTACGTTCTCATATGTAGCAGCATCATTCAATCAAAGTAATACAATCACCAACTGTGAGCTAGAGGCTATTGGAACGTACAATCAAACTGATAACTCCGCGATAAGCAATACAAAGATAACTTGTAAGGAGTTCACGTGGAATACAGACTCTAGCATCACAAATACCGATATCACGGTTAGGAATAATCTAAACGCACTAGGAAGCAGAGGCGGCTCACCTAAGTTCTTTTTAACGTACAGGGGATCACAATATGCTATTGAGGGTCAGATCCCATCGGGATGGCTGGGAACTCCGTCAGGTATAAATCAGGATGCTCTTAGCTATTCAACAACAAATCTAAGGACGAACCAGACCCTTTACTCTAGAGCTACAAACCAAATAGCTCAAAGGATTGAGATAGAGAACACTGGGTACAACTCATCAATGACCCAATACATTGCCCCGTCAGGTATTGGTCAGGATTTTAATTATATAAACTGCGTTAGAGGTGGTGCGCAAGAAGCTGCACTTTTAAGAAATGGCGTGATGGTTCACTACCTTAACACTGGCGGTACGGTTCTGACGTCGCCCAATGGGAGTAGGCATAGGATTATAGTAGATGACTCTGGAAACCTATCAACCGTTAGTTATTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
948976796e4778986ed6547767fc2da2a1559c87842724b97356020ec325311b
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5947
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
A major lineage of nontailed dsDNA viruses as unrecognized killers of marine bacteria Kauffman,K.M., Hussain,F.A., Yang,J., Arevalo,P., Brown,J.M., Chang,W.K., VanInsberghe,D., Elsherbini,J., Cutler,M.B., Kelly,L. and Polz,M.F. 2018-01-24 — GenBank