Protein

View in Explore
Genbank accession
XDR01103.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,67
TF
Evidence RBPdetect2
Probability 0,96
Protein sequence
MDQPDNMKIIETATGKVVRGAKGGGGSVHTPKEDPDSLTSLAVVRMLLALGEGEFESFGADDLKKRVMLNGTPIMNADGTYNFNDVVIDYRPGTSGQSHIAGMPAVESETGVGVDLKATNEWTQALTNTSVDAVRVRIGFPTLLQQKSNGDRVGSRIDYTIFIRNLSGGELWKKDFSAIGKTTTLYERDHRIDLPPSQTGWIVAVRRNTADSTDSNLVNPTKIQAYTEIVDLKLSYPNTALLYVEFNAKLFQSIPKVSIKAKGRKIRIPQNYDPIARTYNGSWDGSFKWAWSNNPAWVFFDCATEPRFALGNKINASMLDKWELYRIAQRCDQLVPDGRGGEEPRYLCDVYIQGREQAWTVLKDLAAIFAGMTFWGGGMLNVLSDRPGDVKQVLTRANVVNGKFKRHGGSGRNRRSVANVSWDDPANHYQTNVAVTPMIELVNRYEWTEPLELSAIGCTRLGEAQRRGKNALITNVTDGTTDFSIGMEGIEFMPGDIIGIADDTFSGGQFGGRIVRASGARSVILDRPVNEVTKANDWILFRQATDPDVSRFQIASISADRKTITVTTDILKGVNPFTPWVVDTQAIAITQHRVISVTWNEQDNTFDCVVLKHDPSKYDAVDLGAHLDDRPTTLIPPGFMEVPKNIQITSYEMLVQGTRQTVLRTTWDKVKGAVVYDAQWRRDNNDWINVPSTSTEGFEVQGIFSGDYWVRVRATNSSGVSSPWGEAVKTGITGREGAVPVPQGLKATSQNWGIKWNWLAGRQADTSDIAFTELEHSVKGPSGYGPFTLLTTVAFPADSFVQDGLGFGQYIRVRARYVDRLGNKSEWSGVVEGHASENADDYLKGISDDLMTSDDGKILLDKINTMPQGVYESMLTDHQNLLDASSEYGAIYAQVQIAYNVAADANGAIAQLETLVSTKFAEQDAAVQSLQTAQSTQEKAFAEYQTNVSSRFGVVSDTTNSLKDADSLLGQRISLSEANIRTVQQTQADADKAFADYKTTVSAQFNQQSAAIEQKMTSQFTATGGTAIYSLKAGVTYNGVYYDAGMTLSTIADGSGVKTRVAFKADQFIIAHPTTGGLFAAFAVIGNDVFIDTARIREASISFAMISDTLQSSNFASGQNGWRLLKNGTFEINSASGNGRLLIQNNQILVYDASGRLRVRFGLW
Physico‐chemical
properties
protein length:1164 AA
molecular weight: 127623,54290 Da
isoelectric point:5,53694
aromaticity:0,09021
hydropathy:-0,30524

Domains

Domains [InterPro]
DC_0014
STR
1–1164
DC_0014
IPR053171
Unmapped
16–866
IPR053171 IPR015406
IPR055385
ATT
106–231
IPR055385 IPR032876 IPR013783
XDR01103.1
1 1164
Architecture
STR
ATT
STR
ATT
STR
STR 1-105 | ATT 106-231 | STR 232-354 | ATT 355-516 | STR 517-1164
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XDR01103.1
1 1164
Domain Start End Length (AA) Confidence
N-terminal 1 173 173 0,7187
Central domain 174 372 200 0,0069
C-terminal 373 1164 791 0,0533
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-173
Central
174-372
C-terminal
373-1164

Taxonomy

  Name Taxonomy ID Lineage
Phage Klebsiella phage vB_KM5a1-KLB22
[NCBI] 		3137615 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Klebsiella sp. M5a1
[NCBI] 		2759708 Pseudomonadota > Gammaproteobacteria > Enterobacterales > Enterobacteriaceae > Klebsiella >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XDR01103.1 [NCBI]
Genbank nucleotide accession
PP554336.1 [NCBI]
CDS location
range 27200 -> 30694
strand -
CDS
ATGGACCAGCCTGACAACATGAAGATCATCGAAACGGCTACCGGGAAGGTAGTGCGCGGCGCGAAGGGTGGCGGCGGAAGCGTCCACACGCCAAAAGAGGACCCGGACAGCCTGACAAGCCTGGCTGTCGTTCGTATGCTTCTGGCTCTTGGGGAAGGTGAGTTCGAATCGTTCGGCGCTGATGACCTGAAGAAGCGCGTCATGCTGAACGGCACGCCGATCATGAACGCTGACGGGACGTATAACTTCAATGACGTCGTGATCGATTACCGCCCAGGAACATCTGGTCAATCCCATATTGCAGGGATGCCAGCGGTCGAGTCTGAAACAGGTGTCGGCGTGGACCTGAAGGCCACGAACGAATGGACACAGGCGCTGACAAACACGTCAGTCGACGCTGTGCGCGTTCGAATCGGCTTCCCTACCCTTCTGCAGCAGAAGTCAAACGGGGACCGTGTAGGCTCTCGCATCGACTACACGATCTTTATCCGCAACCTGTCCGGCGGTGAGCTGTGGAAGAAGGACTTCAGCGCGATCGGAAAGACCACAACGCTGTATGAACGCGACCATCGAATCGACCTTCCACCATCACAGACAGGATGGATTGTGGCTGTGCGCCGTAACACAGCAGACAGCACAGACAGCAACCTGGTCAACCCGACGAAGATCCAGGCTTACACCGAGATCGTGGACCTTAAACTGTCCTACCCTAACACCGCGCTTTTGTACGTGGAGTTTAACGCGAAGCTTTTCCAGTCCATCCCGAAAGTGTCCATTAAGGCGAAGGGCCGCAAAATCCGCATCCCTCAGAACTATGACCCTATCGCGCGGACGTATAACGGTTCGTGGGACGGCTCGTTCAAGTGGGCGTGGAGCAATAACCCGGCTTGGGTCTTCTTCGACTGTGCGACGGAACCGCGCTTTGCTCTGGGCAACAAGATTAACGCGTCCATGCTGGACAAGTGGGAACTGTACCGCATCGCGCAACGTTGCGACCAGCTTGTACCAGACGGTCGTGGCGGCGAAGAGCCGCGCTACCTGTGCGACGTCTACATTCAGGGACGTGAACAAGCCTGGACCGTCCTGAAGGACCTGGCGGCTATCTTCGCCGGAATGACGTTCTGGGGTGGTGGAATGCTGAACGTTCTGTCAGACCGTCCTGGCGATGTTAAGCAGGTACTGACACGCGCGAACGTGGTGAATGGAAAATTCAAGCGTCACGGCGGCAGCGGGAGAAACCGTCGCAGCGTAGCCAATGTGTCATGGGATGACCCGGCGAACCATTACCAGACAAACGTGGCTGTCACACCTATGATTGAGCTTGTGAACCGCTACGAATGGACTGAACCGCTGGAACTATCAGCGATCGGCTGTACTCGCTTGGGCGAAGCGCAGCGTCGCGGAAAGAACGCGCTTATCACCAACGTGACCGACGGGACCACGGACTTCAGCATCGGCATGGAAGGCATCGAATTTATGCCTGGTGACATCATCGGCATTGCCGACGACACCTTCAGCGGCGGACAGTTCGGCGGGCGCATCGTTCGCGCAAGTGGCGCGCGCTCTGTCATCCTAGATCGACCAGTTAACGAAGTAACGAAGGCGAACGACTGGATCCTGTTCAGACAGGCCACAGATCCGGACGTTTCCCGCTTCCAGATCGCGTCCATTTCGGCTGACCGGAAGACCATCACCGTAACGACTGACATCCTGAAAGGCGTAAACCCGTTCACGCCGTGGGTAGTAGACACTCAGGCGATCGCCATTACCCAGCATCGCGTGATCTCCGTTACCTGGAACGAGCAGGACAACACGTTCGACTGTGTGGTTCTGAAACATGACCCGTCAAAGTATGACGCTGTTGACTTGGGCGCTCACCTGGATGACAGACCGACTACCCTGATCCCGCCAGGCTTTATGGAAGTTCCTAAGAACATCCAGATTACCAGTTACGAAATGCTCGTTCAGGGTACGCGTCAAACCGTCCTCAGAACTACTTGGGACAAGGTGAAGGGCGCCGTGGTGTACGATGCCCAGTGGAGACGCGACAATAACGACTGGATTAACGTTCCGTCAACGTCGACAGAAGGATTCGAGGTTCAGGGGATCTTCTCTGGTGACTACTGGGTTCGCGTTCGTGCGACAAATAGTTCTGGCGTGTCATCCCCGTGGGGGGAGGCCGTCAAGACCGGAATCACTGGTCGCGAAGGTGCTGTTCCCGTCCCGCAAGGTCTGAAGGCTACCAGCCAGAACTGGGGCATCAAATGGAACTGGCTCGCGGGTCGCCAGGCTGACACGTCCGACATCGCGTTCACCGAACTGGAACACTCCGTCAAGGGTCCGTCTGGTTATGGTCCGTTCACGCTTCTGACGACAGTGGCATTCCCTGCTGACTCATTCGTGCAGGATGGATTGGGATTTGGGCAGTACATACGCGTCCGCGCGCGTTACGTTGACCGCCTGGGGAATAAGTCAGAATGGTCGGGTGTGGTGGAGGGTCACGCGAGCGAAAACGCAGATGACTATCTGAAGGGTATATCCGACGATCTAATGACGTCTGATGATGGGAAGATCTTGCTGGACAAAATAAACACCATGCCGCAGGGCGTTTATGAATCCATGCTTACAGACCACCAAAACCTTCTCGACGCAAGTTCTGAATATGGCGCTATATATGCTCAGGTGCAGATCGCCTATAACGTAGCGGCTGATGCTAATGGCGCTATAGCTCAACTTGAGACGCTTGTCAGCACTAAGTTCGCAGAACAAGACGCAGCCGTTCAGTCATTGCAGACGGCACAGTCCACCCAGGAAAAGGCATTCGCTGAATATCAGACGAACGTTTCTTCCAGGTTCGGCGTTGTTAGCGATACAACTAACTCCTTAAAAGATGCCGATTCTCTGCTTGGTCAAAGGATAAGCCTTTCTGAAGCCAATATCAGAACAGTACAGCAAACACAAGCAGACGCAGACAAGGCTTTCGCTGATTACAAGACTACAGTGTCAGCCCAGTTTAACCAGCAGTCGGCGGCGATCGAGCAGAAGATGACGTCTCAGTTCACGGCGACAGGCGGGACGGCGATCTATAGCCTGAAGGCTGGCGTGACGTATAACGGCGTCTATTATGATGCCGGGATGACACTATCAACCATCGCCGACGGGTCAGGCGTAAAGACCCGTGTGGCGTTCAAGGCTGACCAGTTCATCATTGCGCACCCTACAACTGGTGGCTTGTTCGCGGCGTTTGCTGTGATTGGTAACGATGTGTTCATCGACACAGCAAGGATCAGGGAAGCATCAATTTCCTTTGCGATGATCTCAGACACGCTTCAGTCGTCTAACTTTGCGTCCGGTCAGAACGGGTGGAGACTCCTGAAGAACGGGACCTTCGAAATTAACAGCGCCAGCGGTAACGGTCGCCTGTTAATCCAGAATAACCAGATCCTTGTTTACGACGCATCTGGTCGTCTTCGTGTTCGTTTTGGTCTGTGGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
066260b5ba227868437eb18c93d4d76ab8d3d90c816906ecc7077908a3a63a38
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7805
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Isolation and characterization of 24 phages infecting the plant-growth-promoting rhizobacterium Klebsiella sp. M5a1 Gittrich,M.R., Sanderson,C.M. and Sullivan,M.B. 2025-02-21 — GenBank