Protein

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Genbank accession
WKW84396.1 [GenBank]
Protein name
baseplate wedge subunit
RBP type
TSP
Evidence DepoScope
Probability 0,91
Protein sequence
MELIKIGQVVDDGQGDYLRKGGQKVNKNFTELYDQLGDGDRPFAAGAWKTWTTGILTPKFGESWTVNTTAGSISVNLPKGRPSDYNKTIKLRDVWGTWANQPVILTAASGDTLKGSPTSKNLDKDLMDVELVYCSPGSWEYVENKRVDRITTSDLSTVAKKEILIETNGQTDFPDVFGQTDYNIANTEVYLRGNLLYYGNTLNANSNYGSIDPADPLNVLPLDGRSIRIRGIEILAGDTLTVVTYMDGIASYRSSYNIKNLQIFDTSVSNKTTVNGELWVGDISTKTDFSVEEFGVDPNQRINPNSLEILLNGVLLSRAGSGDLPLFVCEGAIADTQDACWAAAGNWVPALDDYQFVLDDNGNITTIRFGKRFESGDMITVRWFNNDIGTLMDWDGIDGIKDHADKVYLNSEQVVQVSNRIEYSDFDNPSQKTMVPVPGVFNGRIENIQQFFDLVYPIGTIYENANNPANPSTYMGFGIWKRYAEGRLVAGWTSNQADIEFSMNNNDLDVGGNSSNTAGGTYGAKSVELVPQNIPELSSTDKVLVSHPDGNIIIGGCQIDPDASGPGYTKYIESTVAVNKNNTSPANVGILPPIITAYKWVRVG
Physico‐chemical
properties
protein length:604 AA
molecular weight: 66173,93150 Da
isoelectric point:4,52480
aromaticity:0,09437
hydropathy:-0,33593

Domains

Domains [InterPro]
IPR034695
Unmapped
1–604
IPR034695
DC_2238
STR
1–586
DC_2238
IPR036240
STR
2–230
IPR036240 IPR054430 IPR053827
IPR008987
ATT
3–146
IPR008987
G3DSA:1.20.5.960
Unmapped
13–45
G3DSA:1.20.5.960 IPR027411
WKW84396.1
1 604
Architecture
ATT
STR
ATT
ATT 1-146 | STR 147-450 | ATT 451-603 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
WKW84396.1
1 604
Domain Start End Length (AA) Confidence
N-terminal 1 317 317 0,9270
Central domain 318 516 200 0,1850
C-terminal 517 604 87 0,9104
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-317
Central
318-516
C-terminal
517-604

Taxonomy

  Name Taxonomy ID Lineage
Phage Aeromonas phage GomatiRiver_11
[NCBI] 		3003697 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Aeromonas sp.
[NCBI] 		647 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Aeromonadales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WKW84396.1 [NCBI]
Genbank nucleotide accession
OP967013 [NCBI]
CDS location
range 131388 -> 133202
strand +
CDS
ATGGAACTGATTAAAATTGGCCAAGTGGTTGACGATGGCCAAGGTGATTACCTCCGTAAAGGTGGTCAAAAGGTAAATAAGAATTTTACTGAACTGTATGATCAATTGGGCGATGGAGATCGCCCTTTTGCTGCAGGCGCGTGGAAAACGTGGACGACTGGTATTTTGACACCGAAATTTGGTGAATCATGGACTGTCAACACAACTGCTGGGTCTATTTCGGTAAACCTTCCTAAAGGTCGTCCGTCCGATTACAACAAAACCATTAAACTTCGTGATGTTTGGGGTACGTGGGCAAATCAACCTGTTATTTTGACTGCTGCATCTGGTGATACTTTGAAAGGCTCACCCACCAGCAAGAATCTTGATAAGGATCTGATGGACGTTGAGCTTGTGTATTGCTCCCCAGGGAGTTGGGAATATGTTGAAAACAAACGTGTTGACCGTATCACCACTTCAGATTTGAGTACAGTAGCTAAAAAGGAAATTCTGATCGAGACTAATGGTCAAACTGATTTCCCGGATGTTTTTGGTCAAACTGATTATAATATTGCAAACACCGAAGTATATCTTCGCGGTAACTTGCTTTATTACGGTAATACATTGAATGCCAACTCAAACTATGGGTCAATAGACCCCGCCGATCCTCTGAATGTTCTTCCTCTTGATGGTCGAAGCATCCGAATTCGTGGTATTGAAATTCTTGCAGGCGATACGTTGACGGTTGTCACATATATGGATGGGATTGCATCATATCGTAGTTCATATAACATTAAAAACCTACAAATTTTTGACACATCTGTATCAAACAAAACTACCGTAAATGGTGAATTGTGGGTTGGTGACATTTCCACTAAAACCGATTTCAGTGTTGAAGAATTTGGAGTTGACCCAAATCAACGAATTAATCCAAACTCTCTTGAGATTTTATTAAACGGTGTTCTTTTAAGTCGCGCAGGTTCTGGTGATTTGCCTTTGTTTGTGTGTGAAGGTGCAATTGCTGATACCCAAGATGCATGTTGGGCTGCTGCTGGTAACTGGGTTCCGGCTCTTGATGATTACCAGTTTGTTTTAGATGACAATGGAAACATTACCACAATTCGATTTGGAAAACGATTTGAAAGTGGTGATATGATTACCGTTCGTTGGTTCAACAACGATATCGGGACTCTGATGGACTGGGATGGTATTGATGGAATTAAAGATCATGCTGACAAGGTTTATCTGAATTCTGAACAGGTTGTCCAAGTTTCAAACAGAATTGAATATTCGGACTTTGATAACCCAAGTCAAAAGACAATGGTTCCGGTTCCTGGTGTTTTCAACGGTCGAATTGAGAATATTCAACAATTCTTTGACCTTGTATACCCGATTGGTACGATTTACGAAAATGCTAATAACCCGGCCAACCCAAGCACTTATATGGGATTTGGGATTTGGAAGCGTTATGCTGAAGGCCGTTTGGTAGCTGGATGGACGTCAAACCAGGCCGACATTGAATTCAGCATGAACAACAACGATTTAGATGTTGGTGGGAATTCAAGCAATACTGCCGGTGGAACATATGGCGCCAAATCTGTTGAACTTGTTCCCCAAAATATACCAGAACTTTCGTCAACAGATAAAGTCTTGGTCAGTCATCCAGATGGAAACATCATTATTGGTGGATGCCAAATTGATCCTGATGCAAGTGGCCCTGGTTATACAAAGTATATTGAATCGACTGTTGCGGTAAATAAAAATAACACTTCTCCGGCAAACGTTGGGATTTTGCCTCCAATTATTACTGCTTACAAATGGGTTAGGGTGGGATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
81176908c002b5fcb0903bf88e6e09fc1501c238af0b8d5cfd4bd05c21d3e882
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6355
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequence of Aeromonas phage GomatiRiver_11 Sahoo,L., Parhi,J., Kalappa,G.S., Debnath,C. and Tripathy,P.S. 2023 — GenBank