Protein

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Genbank accession
XMR01798.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,77
Protein sequence
MSINRIRGDGGVIIDSKSFLELPKAPTKQTTDVIRSGMFRYNQEWKAFEGVLDFEDGTVSYRRFANLDNNGKLLTSQLPDSITSGLQFVGTYSPIEDDIDPPLTQSPLPAPAESIKGDYYVVRGIMDAAQAHFEANSPATSPVTFTPTNPTGQGNWIQIMYYVDSNPIVAGSKLVSYAFARIVTASIPSTGHTGLVNLAQDTDLTNAFASGSPMNQTALSDGDWIIITDTKNIRLRQSRASIAAASVLYDNTVMIANNREFVKNSSTVQTMLDNIAVEGLRRDGDSMYDDGTKGAGRFGITYGTASAPALSFNNNAFDPITNPGNDPAKWSDPNTGIFHPQDDTIGFTTNGTERVRVTNGALVLYYSNTTPAATPTIRFDNATNTNVGISGDSNIISLSSMNKVQAEFRNGITVLHGDLTVDGATTLSGGLNVTNITASGNLNVKGNTVLGDANTDAVTINGVSTFAANTVFNAASNRFKNLNLMESGIFTLESTANQSTIQLLSADLKVSMGNYADVTILDNGTIRTRFNRYGIQLPVLATIDNSVGVDGMIAYSNTERTSMQKVQGQWVPIGSGSVRTDPFTASAWVLSGDYYTLTVTASNIVTAEIQELVSTGVYTRVEVDSVTFNGTNVVFSIPSSPDVRFAGRTLVTLR
Physico‐chemical
properties
protein length:654 AA
molecular weight: 70049,13870 Da
isoelectric point:4,78609
aromaticity:0,07951
hydropathy:-0,16101

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XMR01798.1
1 654
Domain Start End Length (AA) Confidence
N-terminal 1 274 274 0,9174
Central domain 275 473 200 0,3982
C-terminal 474 654 180 0,9396
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-274
Central
275-473
C-terminal
474-654

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage Turkey5
[NCBI] 		3375711 No lineage information
Host Escherichia coli
[NCBI] 		562 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XMR01798.1 [NCBI]
Genbank nucleotide accession
PQ471516 [NCBI]
CDS location
range 140077 -> 142041
strand -
CDS
ATGAGTATAAATCGAATTAGAGGTGATGGCGGTGTAATTATAGATAGTAAATCCTTTCTAGAATTACCTAAAGCACCAACTAAACAAACAACTGATGTTATCAGGTCTGGTATGTTTCGATACAACCAAGAATGGAAAGCGTTTGAAGGTGTACTTGATTTTGAAGATGGGACGGTTTCATATAGAAGATTTGCTAACTTAGATAACAATGGTAAACTATTAACTTCACAATTACCTGATTCAATTACCAGTGGTCTTCAATTCGTTGGTACATATTCACCTATTGAAGATGATATTGATCCTCCACTAACACAAAGCCCACTTCCAGCCCCTGCTGAAAGTATTAAAGGTGATTATTATGTTGTTCGTGGTATCATGGACGCGGCACAAGCTCACTTTGAAGCAAACAGTCCAGCTACAAGTCCAGTAACATTTACGCCTACCAACCCAACTGGTCAAGGGAACTGGATTCAAATAATGTATTACGTTGATTCCAATCCAATCGTTGCTGGTTCTAAACTAGTAAGTTATGCATTTGCTCGTATTGTAACTGCTTCAATTCCATCCACAGGTCACACTGGTTTAGTTAATCTTGCACAAGACACTGATTTGACAAACGCATTTGCTAGTGGTTCACCTATGAACCAAACCGCACTTTCTGATGGTGACTGGATTATTATAACTGATACTAAAAACATTCGTTTGCGTCAATCAAGAGCAAGTATTGCAGCGGCTTCAGTATTATATGATAATACAGTAATGATTGCAAACAATCGTGAGTTCGTTAAAAACTCCAGTACTGTTCAAACTATGCTTGATAACATTGCAGTTGAAGGTCTTCGTCGTGATGGTGATTCCATGTATGACGATGGAACTAAAGGTGCAGGTCGTTTTGGTATAACATATGGTACAGCCTCTGCTCCAGCATTGTCATTTAACAATAACGCATTTGATCCAATAACAAACCCAGGTAATGATCCAGCCAAATGGTCTGACCCGAATACTGGTATTTTCCATCCACAAGATGATACTATTGGTTTCACGACTAATGGAACTGAACGTGTACGTGTAACTAATGGTGCATTAGTACTTTACTATTCAAATACAACACCAGCAGCTACTCCAACTATACGTTTTGATAATGCAACTAATACTAATGTAGGTATTAGTGGTGATAGTAATATTATCTCACTAAGTTCAATGAACAAAGTTCAAGCTGAATTTAGAAATGGTATTACAGTACTTCATGGTGATTTGACAGTTGATGGTGCAACTACTCTTAGTGGTGGTTTGAACGTAACTAACATTACAGCAAGTGGTAACCTGAACGTTAAAGGTAATACTGTTTTAGGTGATGCTAATACTGATGCAGTTACTATCAATGGTGTAAGTACTTTTGCAGCTAATACCGTATTCAATGCTGCAAGTAATAGATTCAAAAATCTTAATCTAATGGAAAGTGGTATCTTTACTTTAGAAAGTACAGCTAACCAATCAACTATTCAATTGCTAAGTGCTGATTTAAAAGTATCTATGGGTAATTACGCTGACGTAACTATTCTTGATAATGGTACTATTCGTACACGTTTCAACCGTTATGGTATTCAATTACCAGTACTAGCTACTATTGATAACAGTGTAGGTGTAGATGGTATGATTGCATACTCCAACACCGAACGTACATCAATGCAAAAAGTACAAGGACAGTGGGTTCCAATCGGTTCTGGTTCTGTTCGTACTGACCCATTCACTGCGTCTGCATGGGTGCTTAGTGGTGACTACTATACACTCACTGTAACAGCCAGTAACATCGTTACAGCAGAGATTCAGGAACTAGTGAGTACTGGTGTGTATACACGAGTTGAGGTCGATAGCGTGACGTTTAACGGCACTAACGTGGTCTTTAGCATCCCTTCTTCACCTGATGTAAGGTTTGCTGGAAGAACATTGGTAACATTAAGATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
55879e22716d11c4f7e58af7c691248bb8b3877481563913b891cf1d8c54f64b
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5705
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Transient expression effect of genes from a Jumbo E. coli phage Petrzik,K. and Brazdova,S. 2023-07-26 — GenBank