Protein

View in Explore
Genbank accession
QIG75742.1 [GenBank]
Protein name
pectin lyase fold domain-containing protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,93
Protein sequence
MTRRTVNQLPDAPPEAVATGFMIVADTNGNEYRAPTSVLGGAHIFFTDEANQTPFVYGRLTSPGHSVVGTVITLTATPIGGGTAVVKTATTDDLGDFSFDWTKFLTRGVTYVIEARAAIYLATTTVKTIAVLAAPATGVVATATGKVGDVISIADPVFTGNPTAFRYRYLRGPNYVIPGADQQSYTSQPDDDGDVITAQVMAINAGGESQWYSANPIGPMTNKTSVLLSSPVIAGSTAPGGRMTVTSPGAASENAVIKSDEWQIDQAKIPAQKAAVTRYMQGAAAASAPTLFPDGSNHHGIGLSSVMYTGTNTYSYSVGIGATENDYIPIAVGAAGGNEGAQLYDLFIRHLNTNAALRIKMFAAKYRNGALVEEVQMPRFGATVGQELAEWTPVGNTTPHWTLTHDFGEWLAGDWLVFRQQVRNTSGSSTNNYQWDARSGASYATLPLGAVQDLQKTLSVFTTRADMGGKKVSLLRTFTNNNNDVVVRSNEITLDAAVAQTLVPANTVVPTIFARSDRSNTVWQVDLGAWSNQPTGYTVQWTDNGVDIAGAIFMSYTPTSAQEGHTIACRVTPSNGIGTGTAQSTAGKVVQPAAAYFNPATGNDANDGVTAETAKQTLASSETIPSGATAILMGDFATRLKLGSGRNYEGLGPALTSIGSTSITYAIDQYTDDGSLGRNNVKISKMTIRSGDRAINARNGSNWVIEDVVLADVGFSPLGGIAENASGFMFYKNNGITLTRVEFNLVNSDAFFSDTNDKVIVQDCKFLPVATVEGDTIQTRADRTVNNAPGPHQKGFVLRGTLLDMHSRKTSSGKGCLVTNMQDYAYIHDNVMDGNNFVHGTDEGDNQVFCRNVTRYARKSSYSFGYGIGGYDNQPASHNHQLYDNSYYDMNRALSFTGISVTGYTGEKSGRVDIVAHDETFVKCAIGVRVDRPTSGQFRGCVFHNVTKPLDRTLTTLPPGGDIQAFLWSDHFTYNGSVTAPPAVVTRAEISGGRNSGDELTGPNSVFDIMPILAAFPDAVITHSYQWRRHKPAVQWAQWTEHLGYMCEWIEGATASSYTITDADQGCLVSRVDRIHLTFTEGGVVKTITALAYDATYASSAPVTRTGDLAVALPVMPTSANVSAAAAEGTLVIDMPDLLPGATRTLLHPSRAYDAYTGGAVAVDANGDIVRGSAALTVGSTFSLKIRQKRGIDVVDTQVTFTVVA
Physico‐chemical
properties
protein length:1205 AA
molecular weight: 128238,62610 Da
isoelectric point:5,58644
aromaticity:0,08548
hydropathy:-0,14747

Domains

Domains [InterPro]
DC_1007
ATT
112–252
DC_1007 G3DSA:2.60.40.2700 DC_2223 DC_0572
DC_0400
STR
215–601
DC_0400 G3DSA:2.60.40.2700
IPR011050
STR
591–946
IPR011050
QIG75742.1
1 1205
Architecture
ATT
STR
RBD
ATT 112-252 | STR 253-946 | RBD 949-1205
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QIG75742.1
1 1205
Domain Start End Length (AA) Confidence
N-terminal 1 233 233 0,8186
Central domain 234 464 232 0,6816
C-terminal 465 1205 740 0,1919
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-233
Central
234-464
C-terminal
465-1205

Taxonomy

  Name Taxonomy ID Lineage
Phage Rhizobium phage RHph_Y2_17_1
[NCBI] 		2509590 No lineage information
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QIG75742.1 [NCBI]
Genbank nucleotide accession
MN988548 [NCBI]
CDS location
range 669 -> 4286
strand +
CDS
ATGACTCGCCGAACCGTGAATCAGCTCCCCGACGCGCCGCCCGAAGCCGTGGCGACGGGCTTTATGATCGTCGCCGACACCAACGGCAATGAGTATCGCGCCCCGACGTCAGTTCTGGGCGGCGCCCATATCTTCTTCACCGACGAAGCTAATCAGACGCCGTTCGTCTACGGCCGCCTGACCAGCCCCGGTCATTCCGTTGTTGGCACTGTCATCACGCTCACGGCAACGCCGATCGGCGGCGGAACTGCTGTCGTTAAGACGGCCACGACCGACGATCTCGGCGACTTCTCCTTCGACTGGACCAAGTTCCTGACGCGCGGCGTCACCTATGTGATCGAAGCACGCGCAGCGATCTACCTGGCGACAACCACGGTCAAGACCATCGCAGTGCTCGCAGCCCCGGCAACCGGCGTTGTCGCGACCGCGACCGGTAAGGTTGGCGATGTCATTTCGATCGCCGATCCGGTGTTCACCGGCAATCCGACCGCATTCCGCTACCGCTATCTGCGCGGCCCGAACTACGTCATTCCCGGCGCCGATCAGCAGAGCTACACGAGCCAGCCGGATGATGATGGCGATGTCATCACGGCGCAGGTCATGGCGATCAACGCGGGCGGCGAAAGCCAATGGTATAGCGCCAATCCGATCGGCCCGATGACGAACAAGACGTCCGTGCTGCTCTCGAGCCCGGTTATCGCTGGCTCGACCGCCCCAGGCGGCCGCATGACCGTCACGAGCCCCGGTGCAGCCTCTGAGAACGCGGTCATCAAGTCTGATGAGTGGCAGATCGACCAGGCCAAGATCCCGGCCCAGAAGGCGGCTGTGACGCGTTACATGCAAGGCGCTGCTGCCGCCTCCGCACCTACGCTCTTCCCCGACGGCAGTAACCACCACGGCATCGGTCTGTCGTCGGTCATGTATACCGGCACCAACACCTACAGCTACTCGGTGGGCATCGGCGCGACCGAAAATGACTATATCCCGATCGCCGTTGGCGCGGCTGGTGGTAACGAGGGCGCGCAGCTCTACGATCTTTTTATCCGACATCTGAACACCAACGCCGCCCTCCGCATCAAGATGTTCGCGGCCAAATACCGCAATGGCGCACTGGTCGAAGAAGTCCAGATGCCCAGGTTCGGCGCAACTGTGGGGCAGGAGCTTGCGGAATGGACGCCCGTTGGAAACACGACACCGCACTGGACCCTCACGCATGACTTCGGCGAATGGCTCGCCGGCGACTGGCTCGTCTTCCGGCAGCAGGTCCGCAACACTTCCGGCAGCAGCACCAACAACTACCAGTGGGATGCGCGTTCCGGCGCCTCTTATGCGACGCTGCCACTGGGCGCGGTGCAGGATCTGCAGAAGACGCTGTCGGTCTTCACCACGCGCGCCGATATGGGCGGCAAGAAGGTGAGCCTTCTCCGGACCTTCACGAACAATAACAATGACGTGGTTGTCCGCTCCAACGAAATCACGCTGGACGCTGCCGTGGCGCAGACGCTGGTGCCGGCAAACACCGTGGTGCCGACCATTTTCGCCCGCTCCGATCGCTCGAATACCGTCTGGCAGGTCGACCTCGGTGCCTGGAGCAACCAGCCGACGGGCTACACCGTCCAGTGGACGGACAACGGCGTTGATATCGCCGGCGCCATTTTCATGAGCTACACGCCGACCAGCGCACAGGAAGGCCACACGATCGCTTGCCGCGTCACACCTTCCAACGGCATCGGCACCGGCACCGCTCAGTCCACGGCCGGCAAGGTCGTGCAGCCGGCTGCCGCCTATTTCAATCCGGCGACTGGCAACGACGCTAATGATGGCGTGACCGCTGAAACGGCGAAGCAGACGCTCGCAAGCTCGGAGACCATTCCCTCCGGCGCCACGGCAATCTTGATGGGCGATTTCGCCACCCGCCTGAAGCTCGGCAGTGGCCGCAACTACGAGGGCCTCGGGCCGGCACTGACGTCGATCGGTAGCACCAGCATCACCTATGCCATCGACCAATACACCGACGACGGCTCGCTCGGTCGCAACAACGTCAAGATCTCCAAGATGACGATCCGCTCGGGCGACCGCGCGATCAACGCAAGGAATGGCTCCAACTGGGTCATCGAGGACGTCGTGCTTGCAGACGTCGGTTTCAGCCCGCTCGGCGGTATCGCGGAAAACGCCTCGGGCTTCATGTTCTACAAGAACAACGGCATCACGCTGACCCGTGTCGAGTTCAACCTGGTCAATTCGGACGCGTTCTTCTCCGACACCAACGACAAGGTCATCGTTCAGGACTGCAAATTCCTGCCGGTCGCAACGGTCGAAGGCGACACGATCCAGACCCGTGCCGACCGCACCGTCAATAACGCACCTGGCCCGCACCAGAAGGGTTTCGTGCTGCGCGGCACGCTGCTCGACATGCACTCGCGCAAGACCTCGTCCGGCAAGGGCTGCCTGGTCACCAATATGCAGGACTACGCCTATATCCATGACAACGTCATGGACGGCAACAACTTCGTCCACGGCACCGACGAGGGCGACAACCAGGTCTTCTGTCGCAACGTCACCAGGTATGCTCGCAAGAGCAGCTATTCGTTCGGCTATGGCATCGGTGGCTACGACAACCAGCCGGCCTCGCACAACCACCAGCTCTACGACAACAGCTATTACGATATGAACCGCGCCCTGTCCTTCACCGGTATCTCGGTGACGGGCTATACCGGCGAGAAGTCTGGCCGTGTCGACATCGTCGCCCACGACGAGACCTTCGTGAAATGCGCCATCGGTGTCCGCGTTGACCGCCCGACGTCGGGGCAGTTCCGTGGCTGTGTCTTCCACAACGTCACCAAGCCCCTCGACCGCACGCTGACGACCCTGCCGCCCGGTGGCGATATTCAGGCGTTCCTCTGGAGCGACCACTTCACCTATAACGGCTCGGTCACAGCCCCGCCTGCCGTTGTCACGCGCGCAGAAATCTCGGGCGGCCGCAACTCCGGCGACGAGCTGACCGGCCCCAACAGCGTGTTCGACATCATGCCTATTCTCGCTGCCTTCCCGGACGCAGTGATCACCCACTCCTACCAGTGGCGCAGGCACAAGCCGGCCGTTCAGTGGGCGCAATGGACCGAGCACCTGGGCTACATGTGCGAGTGGATCGAGGGCGCAACCGCGAGCAGCTACACGATTACCGATGCGGACCAGGGCTGCCTGGTCAGCCGCGTGGACCGCATCCACCTGACCTTCACCGAAGGCGGTGTTGTCAAAACGATCACGGCGCTTGCTTATGACGCCACCTATGCCTCCTCGGCGCCCGTCACCCGCACTGGTGATCTCGCCGTCGCGCTGCCGGTGATGCCGACTTCCGCGAATGTCTCGGCAGCGGCTGCAGAGGGCACGCTGGTCATCGACATGCCCGACCTGCTGCCTGGCGCTACTCGCACGCTGCTGCACCCGAGCCGGGCATATGACGCCTACACGGGCGGGGCAGTCGCCGTCGACGCCAACGGCGACATCGTTCGTGGGTCGGCCGCGCTGACGGTCGGCAGCACCTTCAGCCTGAAGATCAGGCAAAAGCGTGGCATCGACGTGGTCGACACCCAGGTTACGTTCACGGTTGTCGCATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
90acee74c9a4e4392d457174d4a2281db656c803aa836c1cc3c7a93bbe99c427
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,2730
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Patterns of diversity and host range of bacteriophage communities associated with bean-nodulatin bacteria Vann Cauwenberghe,J., Santamaria,R.I., Bustos,P., Juarez,S. and Gonzalez,V. 1998-01 — GenBank