Protein

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Genbank accession
YP_009800640.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence RBPdetect
Probability 0,87
Protein sequence
MFMAPFQVVTSESTDTIGSFNLMEFIAIQLPTTAGILPGQTVWKWPSAADPNIMWIPQGGSDPLYAPNGNSVIFTAGKNLVMANRADWTAGVFGFYFNVRCSQALVDNQSMVVHRCLHSASPFETLKLELVKNADTLQRAFYRLTATQANGTQVQVYNQTEIAVGPLYNVYIEWDGTNINLTVGLVNASAPCSALMVHDGIQTLAFNGVNSDNDFIGRLAEVTRYAGTRNP
Physico‐chemical
properties
protein length:231 AA
molecular weight: 25219,30120 Da
isoelectric point:5,05346
aromaticity:0,10390
hydropathy:0,04199

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009800640.1
1 231
Domain Start End Length (AA) Confidence
N-terminal 1 16 16 0,9472
Central domain 17 215 200 0,0252
C-terminal 216 231 15 0,9832
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-16
Central
17-215
C-terminal
216-231

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage Achelous
[NCBI] 		2163982 Uroviricota > Caudoviricetes > Autographivirales > Colwellvirinae > Nerthusvirus
Host Pseudomonas syringae pv. avii
[NCBI] 		663959 Pseudomonadota > Gammaproteobacteria > Pseudomonadales > Pseudomonadaceae > Pseudomonas > Pseudomonas syringae

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009800640.1 [NCBI]
Genbank nucleotide accession
NC_047956 [NCBI]
CDS location
range 44811 -> 45506
strand +
CDS
ATGTTCATGGCACCCTTCCAAGTCGTGACCTCGGAGTCTACCGACACGATCGGTAGCTTCAACCTGATGGAGTTCATTGCCATTCAGTTACCAACGACCGCTGGCATCTTGCCCGGTCAGACTGTCTGGAAGTGGCCTAGCGCGGCTGACCCTAACATCATGTGGATTCCACAGGGTGGCAGCGATCCGCTCTATGCACCAAACGGTAACTCCGTCATCTTCACAGCCGGGAAGAATCTGGTCATGGCCAACCGCGCCGACTGGACTGCTGGTGTGTTCGGCTTCTACTTCAACGTGCGATGCAGCCAAGCTCTGGTGGATAACCAGTCTATGGTTGTTCATCGTTGCCTGCACAGCGCCTCCCCGTTTGAGACTCTCAAGCTGGAGTTGGTGAAGAACGCAGACACGTTGCAGCGAGCCTTCTACCGGCTGACCGCAACGCAAGCCAACGGCACTCAGGTTCAGGTGTACAACCAGACCGAGATTGCAGTCGGCCCGCTGTACAACGTCTACATCGAATGGGACGGTACGAACATCAACCTGACGGTGGGTCTGGTCAACGCCTCTGCGCCTTGCTCAGCACTGATGGTTCACGATGGCATCCAGACGCTGGCGTTCAACGGTGTGAACAGCGACAACGACTTCATTGGTCGTCTCGCAGAAGTCACCCGGTATGCCGGCACGCGGAACCCTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
45399256a662127af1d124b730e9e88229c3542b4c05b2c6b36a7d45e48b3d83
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8158
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Phage therapy in agriculture - a green tech approach to combat plant pathogenic bacteria Djurhuus,A.M., Carstens,A.B. and Hansen,L.H. 1991 — GenBank