Protein

View in Explore
Genbank accession
QIW86566.1 [GenBank]
Protein name
central tail fiber J
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,71
TF
Evidence RBPdetect2
Probability 0,90
Protein sequence
MTVLLLHKNAFRPSADTEQIPVRPGTRFSTQLRQMRHIKGRGKSMCLKTPFVVVRNGQPLLQKQWSTKIKKDDVISIVHLPKGGGGGSNPLQAVLIIAIAVAAAYTGGFVAGAQGLGMGAGWGAAASAAVMIGGTLLMNMFFPPQTPSALDYSKQSASPTYTLSAQGNTARLLEAIPVLYGRFRTYPDLASSPYFETVGNEQYLYQLFCITQGQMEIEKIQVENDDVASYGEIQYQIVNPGQPVTLFPDNVITSIAVNGLELEPSVTFGPFSASGPGVETNFIAVDIFWPGGAYRMDNQGNFNQSTTSVRFEYQKIDDQGQPQGTWQVLVEKSYTFATSTAQSVTEKVEVPLGRYQVRGMRTNGISQDNKEQNKVQWSTLRGYAQSQRDYGDVTLLAVIMKASNNLNQQTSRRINVIGTRKLPVWDPVNGWSVNPIVTCNPMWAACDILRNSTYGRRMPTSRLNIQEAYRLSQVYDSRGDEFNGVFDTTSQLWDALSKVLRAGRTVPVNYAGLIDFVRNEPKTVATYIFQPQNMLENSFSTDYLFVDSASTPNYVQIEYTNADTWSQETVDCVLPGVAPTVPAKVAMLGITNRAQAWREGISMAAANRDQRRMISFTTGREGYLPRYGDMVTISHDVPQWGYSGEVLGFNPGPDDPQWGLHGEIVSNEPFVFTAGSNHQIVFRKRDGSPHGPFNIVAHPSGDEFKAVVQGTEAQLDDIYISDGSREELTQYQFGPTERRGIRAIALSATPDADGKVQLTFTNYADSVHSAESGGVVPPPGPESNLPGIITVPIVDSVTVVLTPFAWVQNIVATPARGAFSYEFEISQDGVNWSNLGISTSPSMQVNLNGGTWFVRARGIGNLIGPWATWTGIIEASVLPVSQIDHVNITGEVFAIGLEWAVREDDFLAESVEIYWGTTNILGNATKLIQLPLPASRYTVTDLGPGDRRYFWFRVIDEAGRVGPWYNSGVGLMGQSSDQADLIMAYLDGQITETQLAQSLITKIESGGEASVEVEAIKNDLAAMYTVKTQLTAGGRTALAGIGVGVENNQGVLESQVLVLADRFAVGRSDDVTGTFKSMFVVDAGNVYMNSAFIQDGTITNAKIGNTIQSNNFVPNVSGWRLSKSGVFENNGSTGEGRRVDTSTRTLIYYANGNLAVAMGIGI
Physico‐chemical
properties
protein length:1162 AA
molecular weight: 126604,95120 Da
isoelectric point:5,20767
aromaticity:0,09380
hydropathy:-0,18382

Domains

Domains [InterPro]
DC_0129
STR
1–1117
DC_0129 DC_2243
NF040662
Unmapped
277–768
NF040662 IPR015406
IPR055385
ATT
281–383
IPR055385 IPR053171
QIW86566.1
1 1162
Architecture
STR
ATT
STR
RBD
STR 1-280 | ATT 281-383 | STR 384-1117 | RBD 1118-1160 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QIW86566.1
1 1162
Domain Start End Length (AA) Confidence
N-terminal 1 645 645 0,8394
Central domain 646 1112 468 0,0440
C-terminal 1113 1162 49 0,3518
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-645
Central
646-1112
C-terminal
1113-1162

Taxonomy

  Name Taxonomy ID Lineage
Phage Achromobacter phage AMA2
[NCBI] 		2723727 No lineage information
Host Achromobacter marplatensis
[NCBI] 		470868 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Betaproteobacteria > Burkholderiales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QIW86566.1 [NCBI]
Genbank nucleotide accession
MT241607.1 [NCBI]
CDS location
range 4065 -> 7553
strand +
CDS
ATGACAGTGCTGCTACTGCATAAGAACGCTTTCCGGCCGTCTGCGGATACTGAACAAATTCCTGTTCGCCCGGGAACGCGTTTCAGCACCCAGCTCCGTCAAATGAGGCACATCAAAGGCCGTGGCAAGTCCATGTGCCTTAAGACGCCTTTCGTGGTGGTTCGCAACGGGCAACCTCTGCTTCAAAAGCAATGGTCTACCAAGATCAAAAAAGACGATGTCATTTCCATCGTGCACTTGCCTAAGGGCGGTGGCGGTGGCAGTAACCCGCTTCAAGCAGTTTTGATTATTGCCATTGCTGTGGCAGCAGCGTATACTGGCGGCTTTGTGGCGGGTGCTCAGGGCCTTGGTATGGGTGCGGGTTGGGGTGCAGCTGCATCTGCAGCAGTCATGATCGGCGGTACGCTGCTCATGAACATGTTCTTCCCGCCTCAAACCCCTTCTGCATTGGACTATTCAAAGCAGTCTGCAAGTCCAACGTATACCCTATCTGCACAAGGTAACACAGCTCGGCTTTTGGAAGCCATTCCTGTGTTGTATGGCCGTTTCCGCACATATCCAGATTTGGCTTCTTCGCCGTACTTTGAAACTGTTGGCAACGAGCAGTACTTGTACCAGTTGTTCTGCATTACGCAAGGGCAAATGGAAATTGAAAAAATCCAAGTGGAAAACGATGATGTCGCTTCCTATGGTGAAATTCAATACCAGATTGTAAATCCTGGTCAGCCTGTCACGCTTTTCCCTGACAACGTTATTACCAGCATTGCAGTTAACGGTCTTGAACTGGAACCGTCTGTTACTTTTGGCCCATTTTCTGCAAGTGGGCCAGGTGTAGAAACCAATTTCATTGCCGTAGACATCTTTTGGCCTGGTGGTGCCTATAGAATGGACAACCAAGGCAACTTCAACCAGTCTACGACAAGCGTTCGTTTTGAATACCAAAAGATCGACGACCAAGGACAGCCTCAAGGCACTTGGCAAGTCTTGGTGGAAAAGAGCTACACCTTTGCCACGAGTACCGCCCAAAGCGTAACTGAAAAAGTTGAAGTGCCGTTGGGACGTTATCAAGTGCGAGGTATGCGTACTAACGGCATTAGCCAAGACAATAAAGAGCAAAACAAGGTTCAGTGGAGCACTCTCCGCGGCTATGCTCAATCACAACGTGACTATGGAGATGTTACTTTGTTGGCTGTCATTATGAAAGCCAGCAATAACCTCAACCAGCAAACTTCACGCCGTATCAACGTCATTGGCACTCGTAAGTTGCCGGTGTGGGACCCTGTAAACGGCTGGTCTGTCAATCCTATTGTTACCTGCAATCCTATGTGGGCGGCTTGCGATATCCTGCGTAATTCTACGTACGGACGACGCATGCCGACTTCTCGCTTGAACATACAGGAAGCCTACCGCCTATCTCAAGTGTACGACTCTCGAGGTGACGAGTTTAATGGGGTATTCGATACCACGTCTCAACTGTGGGATGCTCTTTCCAAGGTGCTCCGTGCCGGCCGTACGGTGCCTGTGAATTACGCAGGCCTCATTGACTTCGTCCGTAATGAACCGAAGACAGTAGCCACCTATATCTTCCAACCTCAGAACATGCTGGAAAACTCGTTCAGCACTGACTATCTGTTCGTAGACTCGGCGTCTACGCCAAATTATGTGCAGATTGAGTACACCAATGCAGATACTTGGTCCCAAGAAACTGTGGACTGCGTGCTGCCGGGCGTGGCTCCTACTGTGCCGGCCAAGGTGGCTATGCTTGGTATTACCAATCGTGCTCAAGCTTGGCGCGAGGGTATCTCCATGGCAGCAGCTAACCGTGACCAGCGTCGCATGATTTCTTTCACGACTGGTCGTGAGGGCTATCTGCCTCGGTACGGCGATATGGTGACTATCTCTCACGATGTGCCTCAGTGGGGCTATTCGGGCGAAGTCTTGGGCTTCAATCCTGGTCCCGATGATCCGCAATGGGGTCTCCACGGCGAGATTGTATCCAATGAGCCCTTTGTCTTCACCGCCGGATCGAACCACCAGATCGTCTTCCGTAAGCGGGACGGTTCGCCTCACGGGCCGTTCAATATAGTGGCGCATCCGAGTGGGGACGAATTCAAAGCGGTGGTTCAAGGCACCGAAGCCCAGCTTGATGATATTTACATTTCGGACGGTTCTCGGGAAGAGCTTACGCAGTATCAGTTCGGTCCTACCGAACGCCGTGGCATTCGCGCAATCGCGCTATCGGCTACTCCGGACGCCGACGGTAAAGTGCAGTTGACGTTCACGAACTACGCGGACAGCGTTCACTCGGCTGAGAGCGGCGGCGTCGTGCCTCCTCCGGGTCCCGAGTCCAACTTGCCAGGCATTATCACGGTGCCGATCGTAGATTCCGTGACTGTTGTTTTGACCCCTTTTGCTTGGGTCCAAAACATTGTTGCGACACCTGCACGCGGTGCATTCAGCTATGAATTCGAGATTAGCCAAGATGGGGTTAACTGGTCCAATCTCGGTATCTCAACGTCACCTTCCATGCAAGTGAACTTGAATGGAGGTACTTGGTTTGTTCGTGCTCGTGGCATTGGCAACTTGATCGGCCCTTGGGCTACGTGGACTGGCATCATTGAGGCATCGGTGTTGCCGGTGTCCCAAATCGATCATGTCAACATTACGGGCGAAGTCTTTGCTATCGGTCTGGAATGGGCGGTCCGTGAAGATGACTTCCTGGCTGAGTCGGTTGAGATTTACTGGGGTACTACCAACATCCTTGGCAATGCCACCAAGCTGATCCAGTTGCCTTTGCCTGCCAGTCGCTATACGGTTACAGACCTCGGTCCTGGTGATCGTCGGTACTTTTGGTTCCGAGTCATTGACGAAGCAGGTCGTGTGGGGCCGTGGTACAACAGCGGCGTTGGCCTTATGGGGCAGTCGAGCGATCAAGCAGACCTCATTATGGCGTACCTGGACGGCCAAATCACGGAAACCCAGCTTGCTCAGTCCTTGATTACCAAAATAGAATCTGGCGGTGAAGCGTCGGTGGAAGTTGAGGCCATCAAGAATGACTTGGCCGCGATGTACACCGTCAAGACGCAGCTGACCGCGGGTGGTCGTACTGCGCTTGCAGGTATCGGTGTTGGTGTCGAAAACAACCAAGGCGTGCTAGAATCACAAGTGCTCGTGTTGGCAGACCGTTTTGCGGTGGGTCGATCTGACGACGTGACTGGCACTTTCAAGTCCATGTTTGTTGTCGATGCTGGCAACGTGTATATGAATTCAGCATTCATCCAGGACGGCACTATCACCAACGCAAAGATTGGAAACACGATTCAGTCCAACAACTTTGTGCCTAACGTATCTGGTTGGCGCTTGTCGAAGTCCGGTGTATTTGAAAACAATGGCTCCACAGGAGAAGGACGTCGAGTTGACACTTCCACCCGCACCCTTATTTACTACGCCAACGGTAACTTGGCTGTGGCGATGGGTATTGGAATATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
d33322a2c19237d6596877577848e6c0c57422fece61ab6d32058d5a08e34035
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,2703
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Isolation and characterization of novel bacteriophages capable of lysing clinical strain of Achromobacter marplatensis Ku,H., Chan,H.T., Brown,T., Kabwe,M., Low,Y.P., Batinovic,S., Petrovski,S. and Tucci,J. 2020-10-08 — GenBank