Protein

View in Explore
Genbank accession
YP_008858910.1 [GenBank]
Protein name
tail protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,90
Protein sequence
MSKTVGSLPSLVQGVSEQEPHNRAPGQMWESVNMIDSPTKGKARRRGTVYSHHVELPSAIAEALVEARSHTEYTFIIDGKEYSLIYRSRASTLGKDYFAQLLDKDTGQFYDIVYENSTWVDNLIAGGVSAVACIGRYVYLAGNTTLPRATSTEAWNSPANLQKLSAWVREGAYSRKFTVVLYHVNGTKQEFAYTTLAAAYPELLDTSDIPFYKPNTNPQEVDPEYQKRVNDRVNAYEGEKSAWIRKAAEDIVPANIARKLAELISTAGIAASSLGPCVVVDDPNYNDIRLLDDGSNTLVSYAGKEVSDPQFVTLYHWAGKVVRVRPSGGGDKESYYLKAVALDSTATGWTKVEWVEAAGVVHEIHNVVSQLVIDPALKTAYVAQDGAGLKSLAPQLGDHPLYKGNVVGDAITAPLPHYFGRVISCMTVFQDRLMICADNIVNFSRSSDYLNFFRVTVLNIQDNDPIEIFAHGSEGDTIKRAVMFERDMVLFGELRQYAINGREFLSPTNPNINVIGNFEGGVRAQPIASGNFLFFGKHANERTGLHQMQPGETAQTTVVYDVSQVLDTYIAGEPVQLLGTTMPNMITYRTDADPSIWYTYRYADEQGTGRVMSSWGKQQYAPELGTVAAITHYRGDLYVITLRSAGGKDYWFADKLSLNVDLARYPHLDSQVRYGQETPWHVAARSSLYVAADKSSDYFLLGAKREAAEDFIEQAPGVESALVVGSVSPAYFQPTNPYMRDSQGQPILNGRITLASYGFHLADTGGMRAYVLKPDRERTLLFEGRVIGNTSNIIGRQPVYSGIRTVSVGRETRTCIIELRSEDWQPLRVTGAEWSGQVFMPRARGLY
Physico‐chemical
properties
protein length:847 AA
molecular weight: 93800,39720 Da
isoelectric point:5,79874
aromaticity:0,10272
hydropathy:-0,27662

Domains

Domains [InterPro]
DC_0058
STR
1–847
DC_0058
IPR058003
TTP
2–842
IPR058003
YP_008858910.1
1 847
Architecture
STR
STR 1-847
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_008858910.1
1 847
Domain Start End Length (AA) Confidence
N-terminal 1 191 191 0,8680
Central domain 192 402 212 0,2543
C-terminal 403 847 444 0,3104
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-191
Central
192-402
C-terminal
403-847

Taxonomy

  Name Taxonomy ID Lineage
Phage Xylella phage Paz
[NCBI] 		1415145 Uroviricota > Caudoviricetes > Autographivirales > Gujervirinae > Pazvirus
Host Xylella fastidiosa
[NCBI] 		2371 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Lysobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_008858910.1 [NCBI]
Genbank nucleotide accession
NC_022982 [NCBI]
CDS location
range 24480 -> 27023
strand +
CDS
ATGAGCAAGACCGTAGGCAGCTTGCCCTCATTGGTGCAGGGCGTATCGGAGCAAGAGCCGCACAACCGTGCGCCGGGTCAGATGTGGGAAAGCGTCAACATGATCGACTCCCCGACCAAGGGCAAGGCACGTCGTCGCGGCACCGTGTACTCGCACCATGTCGAGTTGCCCTCGGCCATTGCTGAGGCTCTGGTGGAGGCGCGCTCCCACACGGAGTACACCTTCATCATCGACGGCAAGGAGTACAGCCTGATCTACCGTAGCCGCGCATCGACGCTCGGCAAGGATTACTTCGCACAACTGCTGGACAAGGACACCGGGCAGTTCTACGACATCGTATACGAGAACAGCACATGGGTGGACAATCTGATTGCCGGGGGCGTGTCGGCCGTGGCGTGTATCGGACGGTACGTATACCTCGCGGGGAATACCACCCTGCCGCGCGCGACTTCTACCGAAGCATGGAACTCTCCTGCCAACTTGCAGAAGCTCAGCGCTTGGGTGCGCGAGGGTGCGTACAGCCGGAAGTTCACTGTGGTTCTTTATCATGTGAACGGGACCAAGCAGGAGTTTGCTTACACCACGCTCGCTGCTGCCTACCCGGAACTGCTGGACACGTCGGACATCCCGTTCTACAAGCCGAATACGAACCCGCAGGAGGTTGACCCTGAGTACCAGAAGCGAGTGAATGATCGCGTCAATGCGTACGAGGGTGAGAAGTCCGCGTGGATTCGCAAGGCTGCGGAGGACATTGTCCCGGCTAACATCGCGCGCAAGCTCGCCGAGTTGATCAGCACGGCAGGCATTGCGGCGTCCTCGCTCGGCCCTTGCGTTGTGGTAGACGATCCGAACTACAATGACATCCGCCTGCTTGACGACGGCAGCAATACGCTCGTCTCCTATGCGGGCAAGGAAGTCAGTGATCCGCAGTTCGTCACCCTGTACCATTGGGCAGGCAAGGTCGTCCGCGTGCGGCCGTCCGGCGGCGGGGACAAGGAGAGCTACTACCTGAAGGCCGTGGCCTTGGACTCCACTGCTACTGGCTGGACGAAGGTCGAGTGGGTGGAGGCAGCCGGTGTGGTACACGAGATTCACAACGTGGTCTCTCAGTTGGTCATCGACCCTGCGCTGAAGACTGCGTACGTGGCCCAGGATGGTGCAGGTCTGAAGTCCCTTGCTCCTCAGCTTGGTGACCACCCACTGTACAAGGGCAACGTCGTCGGCGATGCCATCACTGCGCCGCTGCCGCACTACTTCGGGCGGGTGATCAGTTGCATGACCGTGTTCCAAGATCGGCTGATGATCTGCGCTGACAACATCGTGAACTTCTCGCGGTCCTCGGACTACCTGAACTTCTTCCGCGTCACCGTGCTGAACATCCAAGACAACGATCCTATCGAAATCTTCGCCCACGGGTCCGAAGGCGACACGATCAAGCGCGCTGTGATGTTCGAGCGGGACATGGTTCTGTTCGGAGAACTCCGGCAGTACGCGATCAACGGGCGTGAGTTCCTGTCTCCGACGAACCCGAACATCAATGTGATCGGGAACTTCGAGGGCGGTGTGCGCGCCCAGCCCATTGCGTCCGGCAACTTCCTGTTCTTCGGGAAGCACGCCAACGAACGCACGGGCCTGCACCAGATGCAGCCGGGCGAGACCGCACAGACCACCGTTGTGTACGACGTGTCGCAGGTGCTGGACACGTACATCGCGGGCGAGCCGGTGCAGTTGCTGGGCACGACCATGCCGAACATGATCACGTACCGGACGGATGCGGACCCCTCGATTTGGTACACGTACAGGTACGCAGACGAGCAGGGGACTGGGCGCGTAATGTCCAGTTGGGGCAAGCAGCAGTACGCTCCGGAGTTGGGTACGGTTGCTGCTATCACGCACTACCGTGGCGACTTGTACGTAATCACCTTGCGCTCTGCTGGTGGGAAGGACTACTGGTTTGCAGACAAGCTCAGCCTGAACGTTGACCTCGCGCGCTACCCACATCTGGATTCCCAGGTTCGGTACGGGCAGGAGACTCCGTGGCATGTTGCTGCGCGCTCTTCGTTGTACGTGGCAGCGGACAAGTCCTCGGACTACTTCCTGCTGGGCGCAAAGCGAGAGGCTGCGGAGGACTTCATCGAGCAGGCTCCTGGCGTGGAGTCCGCGCTGGTTGTAGGTTCCGTAAGCCCCGCGTACTTCCAGCCCACGAACCCGTACATGCGGGACAGCCAGGGGCAGCCGATCCTCAACGGGCGCATCACGCTCGCGTCGTACGGCTTCCACCTCGCCGACACCGGAGGCATGCGGGCATACGTACTCAAGCCTGACCGAGAGCGTACCCTGCTGTTCGAGGGTCGCGTCATCGGAAACACCAGCAACATCATCGGGCGGCAGCCGGTCTACTCCGGAATCCGCACCGTAAGCGTAGGGCGCGAGACGCGCACCTGCATCATTGAACTGCGGTCGGAGGACTGGCAGCCGCTCCGCGTCACCGGCGCTGAGTGGTCTGGTCAGGTCTTCATGCCGCGCGCACGAGGACTCTACTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
78218d879db1de96e8d4945da21547a7bd51d193f7e90e8ec7c8a17cf46cf30a
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8858
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50