Protein

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Genbank accession
YP_008241548.1 [GenBank]
Protein name
pectate lyase
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,90
Protein sequence
MAEPIIKKENIEDLPISKVINLQDTLDNFTGGGDVYNNIFRDSSDSGLTGTIDGTNTSFTVSNGSYNPGTLNVFVEGQLFVASHGIIETNPSTGIFAFENAPETGTSLYITYQVGNTVTDIADGSIIESKLSSDIVAKLNVEKGRKKHNAISYFNNKLELSDDLTIIQLIGDSTGNAENEWFVSGLMDYMQKYPDLQIVQTSWNIDNDSYADYKILRESASLPEPYTRLEKATGMYCSLDYENNNFDIDDDLEISIKFSIDDFSAGNEGVLVSRFGSPRSWAIALNSSKIPYFWYSTDGSTLVGSAASTGATEPLPTLNGEVVYLKMTIDVDNGASGNDINWYYSTNDGATWIKLGNTITRSGTTTVFNGTSDIIINGRGTPPWDMNFYKLIVRNGINGEVIASPNAILQQPRNNGLFIKKDMQGNIITCNSPVTQTRTGANTLLIKNASSSGMSLVYSMDSDRFEKQNKNEPDLLMISYSHNAGGDPNYSVNYPLFIDNLKTKYQNLNIIPVTQNPKTGSNSVVINAHKERLLLVGKIAAEKNLMLLDAFKAFMDTGDLDTYVSSDNTHPADPIGNKLWADLFVEMLTNSGGTVSTGGSSEVPDGVIVSDSTGITGATAINNIVSISQEDYDNLTEYDATTIYYII
Physico‐chemical
properties
protein length:647 AA
molecular weight: 70573,55650 Da
isoelectric point:4,39436
aromaticity:0,08964
hydropathy:-0,27852

Domains

Domains [InterPro]
DC_1402
ATT
1–141
DC_1402 DC_1085
G3DSA:2.60.120.200
STR
296–373
G3DSA:2.60.120.200 IPR036514
SSF52266
STR
435–590
SSF52266
YP_008241548.1
1 647
Architecture
ATT
STR
ATT 1-141 | STR 180-594 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_008241548.1
1 647
Domain Start End Length (AA) Confidence
N-terminal 1 150 150 0,9493
Central domain 151 356 207 0,5284
C-terminal 357 647 290 0,4333
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-150
Central
151-356
C-terminal
357-647

Taxonomy

  Name Taxonomy ID Lineage
Phage Cellulophaga phage phi17:2
[NCBI] 		1327972 Uroviricota > Caudoviricetes > Lightbulbvirus >
Host Cellulophaga baltica
[NCBI] 		76594 cellular organisms > Bacteria > Pseudomonadati > FCB group > Bacteroidota/Chlorobiota group > Bacteroidota

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_008241548.1 [NCBI]
Genbank nucleotide accession
NC_021798 [NCBI]
CDS location
range 63475 -> 65418
strand -
CDS
ATGGCAGAACCAATTATAAAAAAAGAAAACATTGAAGACTTACCAATTTCAAAGGTAATAAATCTTCAAGATACATTAGACAACTTCACTGGTGGAGGAGATGTATACAATAATATATTTAGAGATTCAAGTGACTCAGGCCTTACTGGAACTATAGATGGAACTAACACATCTTTCACAGTATCTAATGGATCTTATAATCCAGGAACACTTAATGTATTTGTTGAAGGTCAACTATTCGTAGCAAGTCATGGTATTATAGAAACTAATCCTTCAACTGGAATTTTTGCATTTGAAAATGCACCTGAAACAGGAACTAGTTTATATATTACATACCAAGTAGGTAATACAGTTACTGATATAGCAGATGGATCCATCATTGAGAGTAAGTTATCAAGCGATATAGTAGCTAAACTAAATGTAGAAAAGGGTAGAAAAAAACACAATGCAATATCTTATTTCAATAACAAATTGGAACTTAGTGATGATTTAACAATTATACAATTAATTGGTGATTCAACAGGTAATGCTGAGAACGAATGGTTTGTAAGTGGTCTTATGGACTATATGCAAAAATACCCTGATTTACAAATAGTTCAAACTAGTTGGAATATTGATAATGATAGTTATGCTGATTACAAAATATTAAGAGAAAGTGCTAGTTTACCAGAGCCTTATACTAGATTAGAAAAAGCTACTGGAATGTATTGTAGTCTTGATTATGAAAATAATAATTTTGATATAGATGATGATCTAGAAATATCTATAAAATTTTCAATAGACGATTTTTCTGCTGGAAATGAAGGTGTTTTAGTTTCAAGATTTGGCTCTCCAAGATCTTGGGCTATAGCATTAAATTCTTCTAAGATACCATATTTTTGGTATTCAACAGATGGCTCAACACTAGTTGGAAGCGCTGCATCTACAGGGGCAACAGAGCCTTTACCAACTTTAAATGGAGAAGTAGTATATTTAAAAATGACAATTGATGTTGACAACGGAGCTTCAGGAAATGATATTAATTGGTACTACTCAACTAATGATGGAGCTACATGGATTAAGCTTGGTAATACTATAACAAGGTCTGGAACAACTACAGTTTTTAACGGAACTTCTGATATTATAATAAATGGTAGAGGAACACCTCCTTGGGATATGAACTTCTATAAATTAATAGTTAGAAATGGAATAAATGGAGAAGTAATTGCTTCACCTAATGCTATACTTCAACAGCCAAGAAATAACGGTTTATTTATTAAAAAGGATATGCAAGGAAATATTATTACTTGCAATTCCCCAGTAACACAAACCAGAACAGGAGCTAATACTTTGTTAATAAAAAATGCTTCTAGTTCAGGAATGTCTTTAGTATATTCTATGGATTCTGATAGATTTGAGAAGCAAAATAAAAATGAACCAGATTTGTTGATGATTAGTTATTCTCATAATGCAGGCGGTGATCCAAATTATTCAGTAAATTATCCATTGTTTATTGATAACTTAAAAACTAAGTATCAAAACTTAAATATTATTCCAGTAACTCAAAACCCAAAGACAGGAAGTAATTCTGTAGTAATTAACGCACACAAAGAAAGATTGTTATTAGTAGGGAAAATTGCAGCTGAAAAAAACCTAATGTTATTAGATGCTTTTAAAGCTTTTATGGATACAGGTGATTTAGATACATATGTTAGCTCGGACAACACACATCCAGCTGATCCAATAGGAAATAAATTATGGGCTGATTTATTTGTAGAGATGTTAACTAATAGTGGAGGAACTGTTTCAACAGGAGGTTCTTCTGAAGTTCCAGACGGAGTGATAGTAAGTGATTCAACAGGAATTACAGGAGCTACAGCAATTAATAACATAGTTTCAATATCCCAAGAAGATTACGATAATTTAACCGAATATGATGCAACAACTATATACTATATAATATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
bfb81f75c903dce30302e49e5beb5350bb4d5304e3f2ef6ee1af9e7ea1637cae
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7688
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50