Protein

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Genbank accession
YP_001285695.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TF
Evidence RBPdetect
Probability 0,91
TF
Evidence RBPdetect2
Probability 0,69
Protein sequence
MEVLRMAIVNIDLDTPRPDGKPGDDARVAFGKVNGNFADVQSQITAEVSARQSAISAVQTTVAAKASSSDLAAEISARQSADNAISATVTAQGQAINQRALSTDLTAEATARQAADASIQATLQAADASIQATLQAADASIQATLQAADTALGARIDDVLSMVGRNRLLNPGFTRASRGPGGTFSNFTTEFYTADQWVISGVSMSGSWGRNQLNGASNTLAAGRNYFAVNITSANLASVGQKIEGVHTLAGSKATLSVWLRSTVAGKRLGFRIYQSFGTGGSPSAAVSTIITPTPLTLSTTWQKYTLTFDVPSVSGKTIGTNNNDHLYVVFDITNTDSYGGALSGQTGQIELAYPQLEKGSVATEFEFRAPGVEKALCEWYLKAGVVALRGNGTGSAGAGTFISHEMRAAPAITFANTIYYYNCSGINYASYPTGVEVLVNATGTFAFYSTYIMSAEL
Physico‐chemical
properties
protein length:458 AA
molecular weight: 47858,73070 Da
isoelectric point:5,52688
aromaticity:0,08079
hydropathy:-0,02031

Domains

Domains [InterPro]
DC_0568
STR
2–458
DC_0568
G3DSA:2.60.120.260
STR
185–346
G3DSA:2.60.120.260
IPR008979
STR
206–312
IPR008979
YP_001285695.1
1 458
Architecture
STR
STR 2-458
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Xanthomonas phage Xop411
[NCBI] 		2913975 Uroviricota > Caudoviricetes > Xipdecavirus >
Host Xanthomonas oryzae
[NCBI] 		347 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Lysobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_001285695.1 [NCBI]
Genbank nucleotide accession
NC_009543.1 [NCBI]
CDS location
range 19813 -> 21189
strand +
CDS
ATGGAGGTTTTAAGAATGGCAATTGTTAACATCGACTTAGATACACCTCGTCCAGATGGAAAACCTGGGGACGACGCCCGTGTGGCATTTGGAAAGGTGAACGGGAACTTCGCGGACGTCCAATCCCAGATCACTGCCGAAGTGTCTGCTAGGCAGTCGGCGATATCTGCTGTGCAGACCACCGTGGCAGCAAAGGCATCATCCTCTGATCTAGCGGCAGAGATTTCGGCACGGCAGAGTGCGGACAACGCTATCTCCGCTACGGTCACAGCTCAAGGACAGGCCATCAACCAGCGTGCGCTTAGCACAGATTTGACGGCAGAGGCAACAGCAAGGCAGGCCGCAGACGCGTCAATACAGGCGACACTACAGGCCGCAGACGCGTCAATACAGGCGACACTACAGGCCGCAGACGCGTCAATACAGGCGACACTACAGGCCGCAGACACTGCTCTAGGCGCACGAATTGACGATGTGCTGAGCATGGTGGGTCGGAACAGGCTGCTCAACCCAGGATTTACTCGGGCGTCTCGTGGCCCAGGTGGCACCTTCAGCAATTTTACGACTGAGTTCTACACTGCCGATCAGTGGGTTATAAGTGGTGTTAGTATGTCCGGAAGCTGGGGAAGAAATCAACTAAACGGTGCAAGCAATACATTGGCAGCAGGCCGCAACTACTTTGCCGTGAATATCACTTCCGCCAACTTGGCATCTGTAGGACAAAAAATTGAAGGTGTGCACACTCTCGCGGGCAGCAAGGCAACGCTTAGTGTATGGCTGCGCTCTACCGTGGCAGGCAAGAGATTAGGTTTCAGAATCTACCAATCCTTCGGCACAGGTGGTAGCCCTTCTGCGGCTGTTTCGACGATTATCACACCAACGCCCCTTACGTTGTCCACGACCTGGCAAAAGTATACGCTAACATTTGATGTGCCTTCCGTATCGGGTAAGACCATTGGAACAAACAACAATGACCACCTGTACGTGGTGTTTGACATTACAAATACCGATAGCTATGGCGGTGCATTATCTGGCCAGACTGGTCAAATTGAGTTAGCATATCCGCAGCTGGAAAAGGGATCTGTTGCGACCGAGTTTGAGTTCCGCGCACCCGGCGTAGAGAAGGCACTGTGCGAGTGGTATTTAAAGGCTGGGGTTGTTGCTTTGCGTGGAAACGGGACAGGGAGTGCTGGTGCAGGTACATTTATTTCGCACGAGATGCGTGCAGCACCTGCGATCACATTTGCTAACACAATCTACTATTACAACTGCTCTGGTATCAACTACGCATCGTATCCCACTGGCGTGGAGGTGTTGGTTAATGCTACAGGGACTTTTGCATTTTATTCGACATACATTATGTCGGCGGAGCTATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
8c3da740e0e9de42a850e5b34eb29994d8b635ea5a4f22e8b55c97d2ce3ebb84
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8695
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Comparative Xanthomonas oryzae phage genomics: insights into HNH endonucleases Weng,S.-F., Tseng,Y.-H., Lin,J.-W., Lee,C.-N., Chen,H.-Y. and Chow,T.-Y. 2006-12 — GenBank