Protein

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Genbank accession
YP_009885774.1 [GenBank]
Protein name
major tail protein
RBP type
TSP
Evidence RBPdetect
Probability 0,84
Protein sequence
MPDGANHVAFAYSKDGRDRFMTVYPNLNLLDGTDFKNYTPKIEKYLTIVKKDGGVNNKPYISASYSNPEPNSFADILSWRLDKEHFKPSTTYTFSFYLKGKGTVKTYIHPSLVDTSSNKSFADGKAIKPNVDGEYIWTLTNEWVRHTYMFTTKSSITEDQYVLFRLPTGSNVDICVPKLEEGTIDTPWMPSFSEATAENYPSYIGTYTDNKSNEQSTDPEKYTWKKIE
Physico‐chemical
properties
protein length:228 AA
molecular weight: 26070,76420 Da
isoelectric point:5,86154
aromaticity:0,14035
hydropathy:-0,71140

Domains

Domains [InterPro]
DC_1746
STR
9–226
DC_1746
G3DSA:2.60.120.260
STR
31–176
G3DSA:2.60.120.260
YP_009885774.1
1 228
Architecture
STR
STR 9-226 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009885774.1
1 228
Domain Start End Length (AA) Confidence
N-terminal 1 117 117 0,0885
Central domain 118 217 101 0,4006
C-terminal 218 228 10 0,5715
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-117
Central
118-217
C-terminal
218-228

Taxonomy

  Name Taxonomy ID Lineage
Phage Lactococcus phage CHPC959
[NCBI] 		2675255 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Lactococcus lactis
[NCBI] 		1358 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Lactobacillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009885774.1 [NCBI]
Genbank nucleotide accession
NC_049486 [NCBI]
CDS location
range 8453 -> 9139
strand +
CDS
GTGCCCGACGGGGCTAACCACGTAGCCTTTGCATATAGCAAAGATGGAAGAGATAGGTTTATGACTGTTTATCCTAACTTGAACTTGTTGGACGGAACTGATTTTAAGAATTACACACCAAAAATAGAGAAGTATCTTACTATAGTAAAAAAAGATGGAGGAGTTAATAATAAACCCTACATCAGCGCGTCATACAGTAATCCAGAACCAAACAGTTTTGCAGACATACTTTCTTGGAGATTAGATAAAGAGCATTTTAAGCCTTCAACAACTTATACTTTTAGTTTTTATCTAAAAGGAAAAGGAACTGTTAAAACTTATATTCACCCTTCTCTGGTTGACACTTCAAGTAATAAGAGCTTCGCTGACGGTAAAGCAATAAAACCTAATGTAGACGGTGAGTACATTTGGACTCTTACTAATGAATGGGTAAGACATACATATATGTTTACTACTAAAAGTAGTATAACTGAGGACCAATATGTCCTATTTAGATTACCAACAGGAAGTAACGTTGATATATGTGTACCTAAACTTGAAGAAGGCACAATCGACACTCCTTGGATGCCTTCGTTTAGTGAAGCAACAGCTGAAAATTATCCAAGCTATATCGGAACATATACTGATAATAAATCAAATGAACAAAGTACAGACCCAGAAAAATATACTTGGAAAAAAATAGAATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
f6ae7b5ef85a4606665f405b70a7389243bcbb5dca2561be5e9492d2a9920732
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,9022
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genome Sequences of 31 Lactococcus lactis Bacteriophages Isolated from Foods Marcelli,B., de Jong,A. and Kuipers,O.P. — — GenBank