Protein

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Genbank accession
YP_009302117.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,88
Protein sequence
MALTRLKNIITSRTGRIIYVNPDDFDASDAIDNRGNSALRPFKSIQRAFLEVARFSYRVGLSNDEFDAFSIMLYPAEYVVDNRPGEVLYTNVAPIDENSNLDLTSPNNVLYKYNSIEGGIIVPRGASLVGTDLRRTKIIPKYVPYPTVFAAKGINTEDQVPARTSIFKVTGGTYFWQFSFFDGAEEGVYFKPDSVETLAPKFSHHRLTCFEFADGVNSLSTLISQSRVPNSDYSAVPNVLERTDLEIYYQKVSKAFASIPDTSGDPAADQIQPRVEENRIVGPISDEYRVLQITRNGNTATAVTVDEFDNPRDHGFSVGVNINISGVTGSTGPQSELDASLYNGSFTVTSASGNIFTYQMIQEPTGNAVGSNITVKTEIDTVDSASPYAFNLSLRSVWGMNGMLADGSRATGFKSMVVAQFTGLSLQKDDRAFVRYNESTGNYDVASAGDGAHLDGFAEYRKGWQHRHIVAANDAFIQAVSVFAVGYGAHFTCESGADMSITNSNSNFGNTALRAAGFKAKSFSKDKAGEITHIIPPKALNVISTTATGAVGEATVTLANDGSVNGVIEGMTVIGDNIGSGATVLSVNTNTRVITLTANNTDAVNNNIIFGEETSVNWVNIDIQRTKVINQSLAGAGGTPGTRLYLYGYTAQASPPTTRVQGYTVGARQDGTGVSAVPDKINCLLVSQGASEASVQSASISPYGPSVSGLAAGVDGSPIQYDSNTYTIGGVAGTVGGWYLAVNSVENEIYTTLSTNTQYNNVNFTPTTFLKRIPDPRDLADRTFRIRLKIDKDKTNPLPRDPLSGYVLQPLNSDSTTYKLNRTFYIYDIEKVQEFERGIKDGIYYITLLCASIAPSTSNFNDRKFSQNVNEVYPTFDRDNPLADPDASISVADNETIGLVYSTDGATPTPNKDPKRSITKECIEFLLTDTGWTQPGTTPNYDSVNNRLSNVELTARAGDEEVRKISIRENNDGTVAPIPVEFRRHSILRSGNHTFEYLGFGPGNYSTAFPQTQVETLSADQIKYSQSIKEEAGVAFYSGLNSNGDLFIGNQVINPVTGQITNEDIAQLNVVGEENTTIETFSELVLTDKLTVIGGASNQLESIFAGPVTFQGQTSFTNNIIAKKFTYNNQDGTIIKQTLLAPEDAQGLPDFTNINNYDTPSDGDLVYNTSWSPGKSLGWIYYEGVWKEFGLTDTGQIDIQTFTDSNGDPQQHLGFGVAANTNFRANIQGNVRIDGNLLTTGTGGIAADKYVTRVYSGDGNTLTFNITTFTGGIKHTPDSLLVFLNGVAQIGGTNFTVDDNGANIVFSAGDAPLGSDTIHIIELPI
Physico‐chemical
properties
protein length:1325 AA
molecular weight: 143194,81180 Da
isoelectric point:4,74716
aromaticity:0,09358
hydropathy:-0,26943

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009302117.1
1 1325
Domain Start End Length (AA) Confidence
N-terminal 1 91 91 0,9773
Central domain 92 308 218 0,9236
C-terminal 309 1325 1016 0,0675
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-91
Central
92-308
C-terminal
309-1325

Taxonomy

  Name Taxonomy ID Lineage
Phage Cyanophage S-RIM50
[NCBI] 		687803 Uroviricota > Caudoviricetes > Pantevenvirales > Neptunevirus > Neptunevirus srim50
Host Synechococcus sp.
[NCBI] 		1131 cellular organisms > Bacteria > Bacillati > Cyanobacteriota/Melainabacteria group > Cyanobacteriota > Cyanophyceae

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009302117.1 [NCBI]
Genbank nucleotide accession
NC_031242.1 [NCBI]
CDS location
range 24446 -> 28423
strand +
CDS
ATGGCTCTTACTAGACTTAAGAATATTATTACGTCCAGAACTGGACGTATTATCTACGTTAACCCTGACGATTTCGATGCATCTGATGCTATTGATAATAGGGGAAACTCTGCACTTCGTCCGTTTAAGTCTATTCAGAGGGCATTTCTTGAAGTTGCTAGATTTTCGTATCGAGTCGGTCTGTCAAACGACGAATTTGACGCCTTCTCGATTATGCTTTATCCAGCAGAATATGTTGTTGATAATAGACCAGGTGAAGTTCTTTATACAAACGTTGCTCCTATTGATGAAAACTCTAACTTAGATTTAACATCACCAAACAACGTTCTTTACAAATATAATTCTATTGAAGGTGGTATCATTGTTCCTAGAGGTGCTTCCCTCGTTGGTACTGACCTTCGTCGTACAAAAATTATTCCCAAGTATGTTCCCTATCCTACAGTATTTGCTGCAAAGGGAATCAACACAGAAGACCAAGTTCCTGCTAGAACTTCAATCTTTAAGGTAACTGGTGGTACATATTTCTGGCAATTCTCGTTCTTTGATGGTGCAGAAGAAGGTGTATATTTCAAACCAGATAGTGTAGAAACACTTGCACCTAAGTTCTCTCACCACAGACTGACTTGTTTCGAGTTTGCTGATGGTGTAAACTCTCTTTCAACCCTTATTAGTCAAAGTAGAGTACCAAACTCGGATTATTCTGCAGTTCCTAACGTCCTTGAAAGAACTGACCTAGAGATTTACTATCAGAAAGTATCGAAAGCATTTGCATCAATTCCTGATACATCTGGAGACCCTGCAGCAGACCAAATTCAACCAAGAGTTGAAGAAAACAGAATCGTTGGTCCTATTTCTGACGAATATCGTGTTCTTCAAATTACTCGTAACGGTAACACTGCAACCGCAGTTACTGTTGATGAATTTGATAACCCCAGAGACCATGGATTCTCTGTTGGTGTTAACATTAACATCTCTGGTGTTACTGGTTCTACTGGACCGCAATCGGAACTAGATGCTTCTTTGTATAATGGTTCATTCACAGTAACATCTGCGTCTGGTAATATCTTTACCTATCAGATGATTCAAGAACCTACAGGTAATGCCGTTGGTTCGAACATTACAGTTAAGACTGAGATTGATACTGTTGACTCTGCATCGCCATATGCGTTCAACTTGTCTCTTAGAAGTGTCTGGGGCATGAATGGAATGCTCGCAGATGGTTCTCGTGCAACTGGTTTCAAATCGATGGTTGTTGCACAGTTTACGGGTCTATCTCTGCAGAAAGATGATAGAGCATTTGTAAGATATAATGAGTCTACTGGTAACTATGATGTTGCATCTGCTGGTGATGGTGCTCACTTAGACGGTTTTGCTGAGTATCGTAAAGGTTGGCAGCACAGACACATTGTTGCTGCTAATGATGCGTTTATTCAGGCAGTTTCGGTGTTCGCGGTTGGATACGGTGCTCACTTTACTTGTGAGTCTGGTGCTGACATGTCTATCACCAACTCTAACTCTAACTTTGGTAATACTGCTCTTCGTGCTGCTGGATTTAAGGCAAAATCTTTCTCTAAAGATAAAGCAGGAGAGATTACACATATTATTCCACCTAAAGCACTCAACGTTATTTCTACAACTGCAACAGGTGCTGTTGGTGAAGCAACTGTCACTCTTGCCAATGATGGTTCTGTGAATGGTGTTATTGAAGGAATGACAGTTATTGGCGATAATATCGGTTCAGGAGCAACAGTTCTTTCTGTTAATACAAACACTAGAGTTATTACTCTTACTGCCAACAATACCGATGCAGTTAATAACAACATCATCTTTGGTGAAGAAACTTCTGTTAACTGGGTCAACATTGATATCCAACGCACTAAGGTAATTAACCAGTCTCTTGCTGGTGCTGGTGGAACTCCTGGTACTAGATTATATCTGTATGGATATACTGCTCAGGCATCGCCACCAACAACCAGAGTACAGGGTTACACTGTTGGGGCACGTCAAGATGGCACGGGTGTTAGTGCAGTTCCAGACAAGATTAACTGTCTGTTAGTCTCTCAGGGTGCATCTGAGGCATCTGTTCAGTCTGCATCTATTTCTCCTTATGGACCTAGTGTTTCTGGTCTTGCTGCTGGTGTTGATGGTTCTCCTATTCAATATGACAGCAATACTTATACCATTGGTGGTGTTGCTGGAACTGTTGGTGGATGGTATCTTGCAGTTAACTCTGTAGAGAATGAAATCTACACTACATTGTCTACTAATACACAATACAATAACGTTAACTTTACTCCTACAACTTTCCTTAAGAGAATTCCTGACCCAAGAGACCTTGCAGACAGAACATTCCGTATTCGTCTGAAGATTGACAAGGACAAGACCAATCCTCTGCCTAGAGATCCCCTGTCAGGTTATGTATTACAACCACTTAATAGTGACTCAACGACGTATAAGTTAAATAGAACGTTCTATATTTACGATATCGAAAAAGTACAAGAGTTTGAGAGAGGTATTAAAGATGGAATTTACTACATTACCCTCCTTTGTGCATCTATTGCACCTTCGACTTCTAATTTCAACGACAGAAAGTTCAGTCAAAACGTCAACGAAGTCTATCCTACGTTTGACAGAGACAACCCTCTTGCTGACCCTGATGCTTCGATATCCGTCGCTGACAACGAAACTATCGGTCTAGTATATTCTACCGATGGTGCTACACCTACACCCAATAAAGACCCCAAGCGTTCTATCACTAAGGAGTGTATTGAGTTCCTTCTGACTGATACTGGTTGGACACAACCAGGTACAACTCCCAACTATGATTCTGTTAATAACAGACTTTCTAACGTTGAACTTACTGCTCGTGCTGGTGATGAAGAAGTTAGAAAGATTAGCATCAGAGAGAACAATGATGGAACAGTTGCTCCTATTCCAGTAGAGTTCAGAAGGCACTCTATCTTACGTTCTGGTAACCATACGTTTGAATATCTTGGTTTCGGTCCTGGTAACTATTCGACTGCGTTCCCTCAAACACAAGTAGAGACGTTATCTGCTGACCAAATTAAATATTCTCAGTCCATTAAGGAAGAAGCAGGTGTTGCTTTCTACTCTGGTCTGAACTCTAACGGCGACCTGTTTATTGGTAACCAGGTTATTAACCCAGTTACGGGTCAGATTACAAACGAAGATATTGCACAACTGAATGTTGTTGGTGAAGAGAACACAACGATTGAGACATTCTCTGAGTTGGTTCTTACTGACAAACTGACTGTTATTGGTGGTGCATCTAACCAGTTAGAATCTATCTTCGCTGGTCCTGTTACCTTCCAAGGTCAAACATCCTTCACAAATAATATTATTGCGAAGAAGTTTACTTATAATAACCAAGACGGTACAATCATCAAGCAGACTCTACTTGCACCTGAAGATGCACAGGGTTTACCAGATTTTACCAATATTAATAATTATGATACTCCTTCTGATGGTGACCTTGTTTATAATACAAGTTGGTCTCCTGGTAAGTCTCTTGGTTGGATTTATTATGAGGGTGTTTGGAAAGAATTTGGATTAACTGATACTGGTCAAATTGATATTCAAACATTCACTGATAGTAATGGTGACCCACAACAACATCTCGGTTTCGGTGTTGCTGCTAATACAAACTTTAGAGCAAACATTCAGGGTAATGTTCGAATTGATGGTAACTTACTTACTACTGGTACTGGTGGTATTGCCGCTGACAAATATGTAACTAGAGTATACAGTGGAGATGGCAACACTCTCACATTTAATATTACAACATTTACTGGTGGAATTAAGCACACTCCAGATTCCTTATTAGTCTTCCTTAACGGTGTTGCACAAATTGGTGGTACTAACTTTACGGTAGATGATAATGGAGCAAATATTGTGTTTAGTGCTGGTGATGCTCCATTAGGAAGTGATACCATTCATATTATTGAACTGCCTATCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
f360db34e379dcf288005026bc3c37a3e53743f3bab4bac00692514e005ab456
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,3898
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The genomic content and context of auxiliary metabolic genes in marine cyanophages Marston,M.F., Martiny,J.B.H. and Crummett,L.T. 2016-12 — GenBank