Protein

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Genbank accession
YP_009196394.1 [GenBank]
Protein name
tail fiber protein proximal subunit
RBP type
TSP
Evidence RBPdetect
Probability 0,53
TF
Evidence RBPdetect2
Probability 0,89
Protein sequence
MSKIPFRVSDGLDGADQRAINIGYPDINNHTDGVNVQYFIDWNTLQHYDEKRKYKKNFAVIFNDRVYYALRDVPVDNSASAGPFNATHWQMIRNDPNWMNVSSTPPGGLLLVPGAFVSADPTYSDLDFMLPRAPQNGDTVVIKDVSSKVSTMKLIVRTTDKVFDNGRSDYQLTYPKATVWFSYDVTMNLGKGGWRINTTNPSIHQKTIGPTAQGTQLSAGDSIFRRSSAGKITMILPRYANDGDTITTTDLDLMTPTNNLTIKTHPGAPDSSIGEVGRKSQIFKTTGWGRLTYSQLRDLWEVWDGDEYERWTKIVPTTPASNITLIPSARILIAGSSGEIIFTLPQAPADGDTVELSMRNASKGVVGTLKAALGDKIHASAAMFDIPRLNDVNSFENTSEVQEIKYVSTGHGEQIKLTYMEDKKSWAIAEQSIAPFRASSVASVRNEPGLVFFANEAEVLKNSEDSPSDESAVTPLTLAKKTATESRRGIAKLATQALTNAGVDDLTIVTPKKLHERTALEDRRGIAEIATQEETNIGTDDSRIVTPKKLAGRAATEGMTGIAALVKVGGAKQGTRTAPGEGVNNFNDHAKIVTPKVLFEKTATETNLGMMFWATQTEVNGGAEGNFVVRPSTLAARTATPTRTGLARMVDMSIGEHTKNVTDSLDSNVFITPKALASRIANYEMDGITRPAKDEDVVAGTDDTKYINPLKLKYFADEVVKIEAPDSDGLRITGTVWKGLTFKVSQSNETTRGTSRIATDDETKAGVLDNVIVTPRKLSLRTATPTRTGVIRLATPAEAAGGTLDNVAITPATMGSVISDSPEWGATEVRRGSVYNGSLGNNSDAGATWQGNDVAGSTRALANYKHESYAVSPRGLNTALQHYLPIAAKAADTSKFDGMNSNQFMRTDQDTSTTGSLIVGKNSNAAWFRASKPVGVVSSGANIGWNKNNGSGRTDFMNGRGAGVGGFNFWNGNDNSDSEIIAEIDGTGKVIATGLNISGKSTISDDATFDKEVRYKTQTLDDRFVNVIGDTMTGNLKFNGTSYIEFADSGVIDGTINYMIHGTCGSNDFGYVAVGATAADAGFLEIGTQDGGNEPIYVRQRSGKTGSPSTIKNSATLLDTGGNTVFPKTTSSDRLVARNTGLDAIAWGNKAGKLSNAGNLFGEIWGNTWLSEYLTKTFDTKVDRAGDTITGSLTVKKDVIVEGSFKIKVGTKYLVIRPNPATETVEFDWE
Physico‐chemical
properties
protein length:1230 AA
molecular weight: 132459,43020 Da
isoelectric point:5,84131
aromaticity:0,07398
hydropathy:-0,37699

Domains

Domains [InterPro]
DC_1946
ATT
1–208
DC_1946 DC_1209 G3DSA:6.20.70.20
YP_009196394.1
1 1230
Architecture
ATT
STR
RBD
ATT 1-208 | STR 352-1115 | RBD 1147-1178 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009196394.1
1 1230
Domain Start End Length (AA) Confidence
N-terminal 1 373 373 0,6133
Central domain 374 595 223 0,1051
C-terminal 596 1230 634 0,4489
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-373
Central
374-595
C-terminal
596-1230

Taxonomy

  Name Taxonomy ID Lineage
Phage Cronobacter phage S13
[NCBI] 		1327935 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Cronobacter sakazakii
[NCBI] 		28141 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009196394.1 [NCBI]
Genbank nucleotide accession
NC_028773 [NCBI]
CDS location
range 9548 -> 13240
strand -
CDS
ATGAGTAAAATCCCATTTCGCGTATCCGACGGTCTAGACGGTGCAGATCAACGCGCTATCAATATCGGATATCCAGATATCAACAATCACACTGACGGTGTGAACGTCCAGTATTTCATCGACTGGAACACTTTACAACATTACGATGAAAAACGCAAGTACAAAAAGAATTTTGCTGTAATTTTTAACGACCGTGTTTACTACGCGTTGCGTGATGTCCCGGTGGACAACTCTGCATCAGCAGGTCCGTTTAATGCAACCCACTGGCAAATGATTCGTAACGACCCGAACTGGATGAACGTTAGTAGCACTCCTCCGGGTGGATTACTGCTTGTTCCTGGTGCGTTCGTATCAGCAGATCCAACTTATTCGGATCTGGATTTCATGCTGCCTCGTGCTCCTCAGAACGGTGATACCGTCGTTATCAAAGATGTTAGCTCAAAAGTTTCTACAATGAAACTTATTGTCAGAACAACCGATAAAGTTTTCGATAATGGACGTTCAGATTATCAGTTAACTTATCCGAAAGCAACTGTTTGGTTCTCATATGACGTAACTATGAATCTTGGTAAGGGTGGCTGGAGAATTAACACTACTAATCCTTCCATTCATCAAAAAACTATAGGACCAACTGCGCAAGGAACTCAACTGTCGGCTGGTGACTCTATCTTCCGTCGTTCTTCGGCTGGTAAGATTACGATGATTTTGCCACGTTATGCAAATGACGGTGACACAATTACAACAACTGACTTAGATTTAATGACTCCTACTAACAATCTGACTATTAAAACGCATCCAGGTGCACCTGATAGCTCAATCGGTGAAGTCGGAAGAAAGTCTCAGATTTTCAAAACCACAGGTTGGGGTCGTCTGACGTACTCACAATTGAGAGATCTGTGGGAAGTATGGGACGGCGATGAATACGAACGTTGGACTAAAATTGTTCCTACAACTCCAGCTTCAAACATTACTCTTATTCCTAGTGCGCGTATTCTGATCGCAGGTTCATCAGGCGAAATCATATTCACTCTACCTCAAGCTCCAGCAGACGGTGATACCGTCGAACTGAGTATGAGAAACGCTTCTAAAGGTGTCGTAGGAACTCTTAAGGCTGCGTTAGGTGACAAGATTCATGCAAGTGCAGCAATGTTCGATATTCCTCGTCTGAACGATGTTAATTCATTCGAAAATACCTCCGAAGTTCAGGAAATCAAATACGTTTCAACCGGTCACGGTGAACAGATTAAACTGACTTACATGGAAGATAAAAAATCATGGGCAATTGCAGAGCAATCAATCGCTCCGTTCCGTGCTTCTTCTGTAGCGAGTGTTCGTAACGAACCAGGTCTCGTTTTCTTTGCAAACGAAGCCGAGGTTCTGAAAAACAGTGAAGATAGTCCAAGTGACGAATCTGCGGTTACTCCTTTAACTCTGGCTAAAAAGACTGCAACTGAGTCAAGACGAGGTATCGCTAAATTAGCAACCCAAGCTCTTACCAACGCAGGCGTGGATGATTTAACGATTGTTACACCTAAGAAACTTCATGAGCGCACCGCGCTGGAGGATCGTCGTGGTATCGCAGAAATTGCAACTCAAGAAGAAACAAACATCGGAACAGATGATTCTAGAATTGTTACTCCTAAAAAGTTAGCAGGACGTGCTGCAACTGAAGGAATGACAGGAATCGCTGCGCTTGTAAAAGTTGGCGGTGCAAAACAAGGAACAAGAACTGCTCCTGGTGAAGGGGTCAATAATTTTAACGATCATGCGAAAATTGTTACTCCTAAAGTTCTGTTTGAAAAAACTGCGACTGAAACAAATCTTGGTATGATGTTCTGGGCGACTCAGACGGAAGTTAATGGCGGAGCAGAAGGTAACTTCGTTGTTCGTCCATCGACACTCGCGGCTCGTACTGCGACTCCTACTCGTACAGGTCTTGCTCGCATGGTTGATATGTCAATCGGTGAACATACGAAAAACGTTACCGATAGTCTTGATTCTAACGTATTCATTACACCAAAGGCTCTTGCAAGTCGTATCGCAAACTATGAAATGGATGGTATCACACGTCCTGCAAAAGATGAAGACGTTGTGGCAGGAACAGACGATACGAAATATATCAATCCGTTGAAGTTGAAATATTTTGCTGACGAAGTTGTCAAGATCGAAGCTCCTGATTCCGACGGACTAAGAATCACAGGAACTGTATGGAAAGGTTTAACGTTCAAAGTATCACAATCAAACGAAACAACTCGCGGAACTTCACGCATCGCAACCGATGATGAAACAAAAGCTGGTGTTCTTGATAACGTGATTGTTACTCCTCGTAAACTGTCATTAAGAACCGCAACCCCTACAAGAACAGGTGTTATCAGACTTGCAACTCCTGCGGAAGCTGCCGGTGGTACTCTCGATAACGTCGCTATTACTCCTGCAACCATGGGATCAGTAATCTCTGATTCTCCAGAATGGGGCGCAACCGAAGTTCGTCGTGGTTCAGTTTACAACGGTTCACTGGGAAATAACTCAGATGCAGGTGCAACATGGCAAGGAAACGATGTCGCTGGATCAACTCGTGCTCTTGCTAACTACAAACACGAAAGTTATGCAGTTTCTCCTCGAGGACTGAATACAGCATTACAGCATTATTTACCAATTGCTGCTAAAGCTGCTGATACTTCGAAATTCGATGGAATGAATAGTAATCAGTTCATGAGAACCGATCAAGATACCAGCACAACGGGATCTTTGATTGTTGGAAAAAACTCAAATGCTGCATGGTTCAGAGCAAGCAAGCCAGTGGGTGTGGTTTCATCCGGTGCAAACATAGGATGGAATAAAAACAACGGTTCAGGAAGAACTGATTTTATGAATGGTCGTGGAGCTGGTGTTGGCGGATTTAACTTCTGGAACGGAAACGATAATTCCGATTCTGAAATTATCGCCGAGATTGATGGAACTGGTAAAGTAATTGCAACAGGACTTAATATTTCCGGAAAATCTACTATTTCAGACGATGCAACGTTTGATAAAGAAGTTCGATATAAAACACAAACTCTCGATGATCGTTTTGTTAACGTTATCGGCGATACAATGACCGGAAATCTGAAATTCAATGGAACGTCATATATTGAATTTGCAGATAGCGGTGTTATCGACGGAACGATTAATTATATGATTCACGGAACATGTGGTTCTAACGACTTTGGATACGTTGCAGTAGGTGCAACTGCTGCGGATGCAGGATTCTTAGAAATAGGAACTCAAGATGGTGGAAATGAACCTATTTACGTTCGTCAACGTTCTGGTAAAACAGGATCACCTAGCACCATTAAAAACTCCGCGACTCTGCTTGATACCGGTGGTAACACTGTGTTTCCTAAAACAACGTCATCGGATCGTCTTGTCGCTCGCAACACCGGACTTGACGCTATCGCTTGGGGTAATAAAGCTGGCAAATTAAGTAACGCCGGTAACTTGTTCGGTGAAATATGGGGAAATACCTGGTTAAGCGAATATCTAACCAAAACATTTGATACCAAAGTTGATCGTGCAGGTGACACAATCACCGGTTCTTTGACAGTGAAAAAAGATGTTATCGTTGAGGGAAGTTTCAAGATTAAAGTTGGTACGAAATATCTGGTAATTCGTCCTAACCCAGCAACAGAAACAGTTGAATTTGATTGGGAGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
1690df12bd30c9b3ffec04b81abc535ced7aee2e93b7aae558cdb0c7a0a800c1
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,2809
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete Genome Sequence of Cronobacter sakazakii Bacteriophage S13 Kim,Y., Shin,H. and Ryu,S. 2012-06 — GenBank