Protein

View in Explore
Genbank accession
QDH50550.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,73
Protein sequence
MPLSRLDNFLKNVKGNILYVDPNNLDATDGVENQGNSLARPFKTIQRALVEASRFSYQKGKDNDRFEKTTIYLSPGVHHIDNRPGWIPTGGNTFLQRNGITSSDFTAFSNTSNFDIFDANNILYKLNSIHGGVIMPRGVSVVGQDLRKCVIRPIYVPNPENNAIEPSAILRVTGGCYLNSCTIKDADPQKPAYKDYTTNKFKPTFSHHKLTVFEYADGNNKVNINDDFISYSTDRTDLDMYYEKIGIVYGPASGREIEPDYPSANVDIEPRIDEYRIVGPVSGEVGINSIKAGDGVTPTSVIDVKLSNAIIGLNVDTNVIINDVTDKRYNGTYLVTEITSTNEIGVTGFKYEVPVAPGDALPNPTGTSVVLSTDTVTSASPYIFNVSLRSIFGMCGMHADGSKATGFKSMVAAQYTGVGLQVDDNAFVKYNQNSGSFDDSTTIPNLHTDIDAVYKPEYSNYHIKVSNNGFMQLVSIFAIGYSNQFLAESGGDFSVTNSNSNFGQIALTSRGYKNNVFSQDDVGYITQIIPPKALKPEIATVEFSSIDVTKTTSVGDTSRLYLYNFTNPDEAPNTTIQGYRFGSKKTENINVVIPVSGTPEVFRARVVMDNTAYAAKKATGSKMARVGRNVSTGNSITNSTFTFTEDHQFIQGESIRVISNDGRLPDGLESNKVYFSIVDGLGGNQLQLAQSFNDSLSGNKISINNLGDTLIVESRVGDKDAGDVGHPVQYDTTERQWYVNVSSASTENNLYAKVVGGGLGDATPRSYITRLKDTRQSADRIHKVRFVIPSSTGSDSARPPLDGYVIQQSSDVTSTSNTEIALDFNPGSVTMSNDAQMRNFSFIANVDYRSGLAFYTTEKPHGLSIGSTVEINNVTSTLFPTVGVGNSGFNGTYEVTGISSARTFSVNQIRSSPGTFTNNTSQRTTALPTVKRKKFSKDFYVYNVETINDYKNGEQDGIYYLSVLNADVKPSVAPFNVEEYAFSQPVGNLYPQLDRDNPKSTATSAACYAIPSNIGETVINNPTNSITGETLEELFSDSGVGAGITDIVSNNVGTAYTIFTDTDHGCNRITRAVIDNPGAGYGDGSSTIQYYYNATLENLGAGSLGRNATALVTVDGTSTGEIIDIAVMDGGTAFVEGDTFRVVGIATTTGFSAATGSVNKIYDNRNDTIRIAGINDYDGRAYNSLYRVTSIPGIKEIEVEPLAPVSPGITTVGLGNNICAPAAFSVIGPAYDTSNFVYNKDVGLATVTTDYANNFRVNNSVVISGAAQTFYNGSFVCVDKIGLTTVVLQVGVNTVTPATGGTIRLHSGGIRNNFGDLVVGNGRLHGRETPIYAGITTTLSAAITSKTTDTINVSNMTDFGFLIGDYIQVNDEIMRIKTTVSRTSGVTQLKVFRGVYGSIADTHVSGSVVQRILFYPIEFRRNSLIRASAHTFEYLGYGPGNYSTAFPDKQTKQLTLDQQITAQSQSTSGGVVNYTGMNDRGDFFIGNKRIASNTGREQVYDTPVQTICGEDPYTVGSTNDVSDFNFVDSSVVKIERNVVVDGGDKSNILSEFNGPVQFTKKVVSTSSEGIEANNIFIQGNAQVSRKITVGIATPSDAGNPGDIVYNANPASGGTVGWVYTTNNEWKTFGTISS
Physico‐chemical
properties
protein length:1633 AA
molecular weight: 176101,11530 Da
isoelectric point:5,12741
aromaticity:0,09186
hydropathy:-0,27336

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QDH50550.1
1 1633
Domain Start End Length (AA) Confidence
N-terminal 1 77 77 0,8508
Central domain 78 310 234 0,9382
C-terminal 311 1633 1322 0,1662
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-77
Central
78-310
C-terminal
311-1633

Taxonomy

  Name Taxonomy ID Lineage
Phage Synechococcus phage S-B43
[NCBI] 		2484638 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Synechococcus sp. MW02
[NCBI] 		1620844 Cyanobacteriota > Cyanophyceae > Synechococcales > Synechococcaceae > Synechococcus >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QDH50550.1 [NCBI]
Genbank nucleotide accession
MN018232.1 [NCBI]
CDS location
range 81433 -> 86334
strand +
CDS
ATGCCATTATCTCGCTTAGATAATTTTCTGAAGAACGTTAAGGGAAATATTCTGTATGTTGATCCAAACAATTTGGATGCAACTGATGGGGTAGAGAACCAAGGTAATTCTCTTGCACGTCCATTCAAAACCATTCAAAGAGCTCTGGTAGAGGCATCAAGGTTCTCCTATCAGAAAGGTAAAGATAATGATAGGTTTGAAAAGACTACAATTTATTTGTCACCAGGTGTCCACCACATTGATAATAGACCTGGTTGGATTCCGACTGGAGGAAATACGTTTCTACAGAGGAATGGTATAACTTCTTCTGATTTTACTGCTTTTAGTAACACATCAAACTTCGATATCTTTGATGCCAACAATATTCTCTATAAACTGAATAGTATCCATGGTGGTGTTATTATGCCTCGTGGTGTATCTGTTGTTGGACAGGATCTTAGAAAATGTGTGATTCGTCCGATTTATGTTCCAAACCCTGAAAATAATGCAATTGAACCCTCAGCAATCTTAAGAGTAACTGGTGGTTGTTATCTGAACAGTTGTACTATCAAAGATGCTGATCCACAAAAACCAGCATATAAAGATTATACGACAAACAAATTCAAACCAACATTTTCACACCACAAACTGACTGTTTTTGAATATGCGGACGGTAATAATAAAGTCAATATCAATGACGACTTTATTTCATATTCAACAGACCGTACTGATTTGGATATGTATTATGAGAAGATTGGTATTGTATATGGTCCAGCAAGTGGAAGAGAGATTGAACCTGATTATCCAAGTGCGAATGTAGATATTGAACCAAGAATTGATGAATATAGAATTGTTGGACCTGTCTCTGGTGAAGTAGGTATCAACAGTATCAAGGCAGGTGATGGTGTCACACCAACTTCTGTCATTGATGTTAAATTGTCAAATGCGATCATTGGTCTTAATGTTGATACTAACGTTATCATTAATGATGTAACCGATAAGAGATATAACGGTACTTATCTTGTCACAGAAATCACCTCTACTAATGAAATTGGTGTTACAGGATTTAAGTATGAAGTTCCTGTAGCTCCAGGTGACGCACTTCCTAACCCAACTGGTACAAGTGTAGTTCTTTCTACTGATACTGTTACTTCTGCATCTCCCTATATCTTCAATGTGTCATTGAGATCTATTTTTGGTATGTGTGGTATGCATGCCGATGGTAGTAAGGCAACGGGTTTCAAATCCATGGTTGCTGCACAATATACTGGTGTAGGTCTTCAAGTTGATGACAACGCATTTGTCAAGTATAATCAAAATAGTGGCTCGTTTGATGATTCAACCACTATTCCTAATTTACACACTGACATTGATGCTGTATATAAACCAGAGTATTCAAACTATCACATTAAGGTATCCAATAATGGATTCATGCAATTGGTATCCATTTTCGCAATTGGATATTCAAATCAATTCTTAGCTGAGTCTGGTGGTGATTTTTCTGTCACAAACTCAAACTCCAACTTTGGTCAGATTGCTCTGACTTCAAGAGGATATAAGAATAATGTATTCTCACAGGATGATGTTGGTTACATTACTCAAATTATCCCACCAAAGGCACTTAAGCCAGAAATTGCAACAGTAGAGTTCTCATCTATCGATGTAACAAAGACAACATCTGTTGGAGATACTTCAAGACTTTATCTTTATAACTTCACCAATCCTGATGAGGCACCTAATACGACCATTCAGGGTTATAGATTTGGTTCAAAGAAAACAGAAAATATTAATGTTGTCATTCCTGTAAGTGGTACACCTGAAGTATTCAGAGCAAGAGTTGTCATGGACAACACTGCATATGCTGCCAAGAAGGCAACAGGATCAAAAATGGCCAGGGTTGGTAGAAATGTATCAACTGGTAATAGTATCACAAACTCTACATTTACCTTTACAGAAGACCACCAGTTCATTCAAGGTGAATCGATTAGAGTCATTTCAAATGACGGTAGACTTCCTGATGGTTTAGAGAGTAATAAAGTATACTTCTCTATCGTTGATGGTCTGGGTGGTAATCAATTACAACTTGCACAATCATTTAACGACTCGCTGTCAGGAAACAAGATTTCTATCAACAATCTTGGTGATACTCTGATTGTAGAGAGTAGAGTTGGTGATAAGGATGCTGGTGATGTAGGTCACCCAGTTCAATATGATACGACAGAACGTCAATGGTATGTTAATGTCTCATCTGCTTCTACTGAAAATAATCTGTACGCAAAAGTTGTTGGTGGTGGATTAGGTGATGCAACCCCAAGGTCTTACATCACAAGACTGAAAGATACCAGACAATCTGCAGATAGAATTCATAAAGTAAGATTCGTCATTCCATCATCTACAGGTTCTGATTCAGCAAGACCACCTCTGGATGGTTATGTGATTCAACAGTCTAGCGATGTAACTAGTACATCAAATACAGAGATTGCACTTGATTTCAACCCTGGTTCTGTTACGATGAGCAATGATGCTCAAATGAGAAACTTTAGTTTTATTGCTAATGTTGATTACAGGTCAGGACTTGCATTCTATACCACTGAAAAACCACATGGTCTTTCTATTGGTTCAACCGTTGAGATTAATAATGTTACAAGTACACTCTTCCCAACTGTAGGTGTTGGTAATTCTGGTTTCAACGGTACATACGAGGTCACTGGTATCAGTAGTGCAAGAACATTCTCGGTAAATCAGATTCGATCAAGTCCTGGTACCTTTACTAACAATACTTCACAGAGAACCACTGCACTTCCAACAGTCAAGAGAAAGAAATTCTCTAAGGACTTTTACGTTTATAATGTAGAAACTATTAATGACTATAAGAATGGAGAGCAAGATGGTATCTATTACCTGAGTGTTCTTAATGCTGATGTAAAACCATCTGTTGCACCATTCAATGTTGAAGAATATGCATTCTCACAACCTGTCGGAAATCTTTATCCACAGTTAGATAGAGACAATCCAAAATCAACTGCAACATCTGCAGCATGTTATGCTATTCCAAGTAATATCGGTGAGACGGTTATTAATAATCCCACCAATAGTATCACTGGAGAGACTTTAGAAGAACTCTTTAGTGATAGTGGAGTTGGTGCTGGTATTACAGATATTGTATCAAATAACGTTGGTACTGCATATACAATCTTTACTGATACTGACCATGGTTGTAACAGAATTACCAGAGCAGTTATTGATAACCCAGGGGCTGGATATGGTGATGGTTCATCAACCATTCAATACTATTATAATGCAACACTTGAAAACCTTGGTGCTGGTTCACTTGGTAGAAATGCAACAGCATTGGTTACTGTAGATGGAACATCGACAGGTGAAATTATTGACATTGCTGTCATGGATGGTGGTACTGCATTCGTCGAGGGTGATACTTTCAGAGTTGTTGGTATTGCAACAACCACTGGATTTAGTGCAGCAACAGGTTCTGTCAACAAGATTTATGATAACAGAAACGACACCATTAGAATTGCTGGTATCAATGATTATGATGGAAGAGCATACAATTCACTTTATAGAGTGACTTCAATTCCTGGAATTAAAGAGATTGAAGTAGAACCATTGGCACCAGTATCACCAGGTATCACAACAGTTGGTCTTGGAAACAATATATGTGCCCCAGCTGCATTCTCTGTCATCGGTCCTGCATATGATACGAGCAATTTTGTTTATAATAAGGATGTTGGACTTGCAACAGTAACTACAGACTATGCAAACAACTTTAGAGTTAATAACAGTGTAGTCATCAGTGGTGCTGCGCAGACATTCTACAATGGTTCATTTGTTTGTGTTGATAAGATTGGTCTGACAACTGTTGTTCTTCAAGTTGGTGTCAATACCGTCACTCCTGCGACTGGTGGAACTATCAGACTTCACAGTGGTGGTATTAGAAATAACTTTGGTGATTTGGTAGTTGGTAATGGTAGACTTCATGGTAGAGAGACACCAATTTATGCTGGTATCACAACTACATTGTCTGCGGCTATTACAAGTAAAACCACTGATACAATTAACGTATCAAATATGACAGACTTTGGTTTCTTGATTGGTGATTACATTCAAGTCAATGATGAAATCATGAGAATCAAGACCACTGTAAGTAGAACTTCTGGTGTAACACAATTGAAGGTATTCAGAGGTGTTTATGGTTCTATCGCAGATACCCATGTATCTGGTTCAGTAGTTCAGAGAATTCTTTTCTATCCTATCGAATTTAGAAGAAACTCACTGATCAGAGCATCTGCACACACATTTGAATATCTTGGTTATGGTCCAGGTAACTACTCAACCGCATTCCCTGATAAGCAAACAAAACAACTTACACTTGATCAACAAATTACTGCTCAATCACAGTCCACTAGTGGTGGTGTTGTCAACTACACTGGTATGAATGATAGAGGTGACTTCTTTATTGGTAATAAGAGAATCGCATCTAATACTGGTAGAGAACAAGTTTATGATACGCCAGTTCAAACGATATGTGGAGAAGACCCATATACGGTTGGTTCTACAAACGATGTTTCCGATTTCAACTTTGTTGATAGTTCTGTGGTTAAGATTGAAAGAAACGTTGTTGTTGATGGTGGTGACAAGTCCAACATTCTCTCAGAGTTCAATGGTCCTGTTCAATTCACCAAAAAGGTAGTCAGTACTTCATCTGAAGGTATTGAAGCCAATAACATCTTCATTCAAGGTAATGCCCAGGTGTCTAGAAAAATCACTGTCGGTATTGCCACTCCATCTGATGCTGGTAACCCTGGTGATATCGTTTACAATGCAAACCCAGCAAGTGGTGGAACAGTTGGTTGGGTCTACACAACTAACAATGAGTGGAAGACATTTGGTACTATCAGTAGTTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
e92d52a98f08cf1250cd2b19e491b94a510eeeef43e341613cdbc09e80eeca0d
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,8923
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Isolation, characterization and genome sequencing of the novel cyanophage S-B43 from the Bohai Sea, China Wang,M. 2020-10 — GenBank