Protein

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Genbank accession
QBQ71188.1 [GenBank]
Protein name
minor tail protein
RBP type
TSP
Evidence RBPdetect
Probability 0,90
Protein sequence
MAYGDIEISEDSGEPIELFVFERPQQVFRYTNHDTDINFLGNTFGSIPIKRSRVEATTDLGKSGVTIEMVRNATFAQLFIANIPAETFNVTIYRTHLSSVEDSIILWQGRVVNAKLLESTAEIYCQPLYTSIKRPGLRRAYQINCPHVLYGPSCKVVRDSLAITTTNTTIAGNTITSPDLVETDALLGPTWYTGGYVEITSGGAVDRRFITNYDNLSGSVTLNLPFKALANNSEITVYPGCDRVVTTCSLKFNNLDNFGGFPYIPQKNPMDGTPIF
Physico‐chemical
properties
protein length:276 AA
molecular weight: 30548,18430 Da
isoelectric point:5,14759
aromaticity:0,10145
hydropathy:-0,11232

Domains

Domains [InterPro]
DC_0733
STR
1–185
DC_0733 IPR018964
IPR011928
Unmapped
23–267
IPR011928
PF09931
ATT
25–156
PF09931
QBQ71188.1
1 276
Architecture
STR
ATT
STR
RBD
STR 1-24 | ATT 25-156 | STR 157-185 | RBD 191-267 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QBQ71188.1
1 276
Domain Start End Length (AA) Confidence
N-terminal 1 274 274 0,6805
Central domain 275 274 1 0,1129
C-terminal 275 276 1 0,7795
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-274
Central
275-274
C-terminal
275-276

Taxonomy

  Name Taxonomy ID Lineage
Phage Shewanella phage S0112
[NCBI] 		2559821 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Shewanella indica
[NCBI] 		768528 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Alteromonadales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QBQ71188.1 [NCBI]
Genbank nucleotide accession
MK675901 [NCBI]
CDS location
range 46885 -> 47715
strand +
CDS
ATGGCCTACGGTGATATCGAAATTTCTGAAGATTCTGGAGAACCAATTGAGCTTTTTGTATTTGAACGTCCGCAGCAAGTCTTCAGATACACCAATCATGATACGGATATTAATTTTCTTGGTAATACCTTTGGATCTATTCCAATAAAAAGAAGCAGGGTTGAAGCCACCACAGATCTTGGAAAATCTGGGGTTACCATCGAAATGGTACGCAATGCTACCTTCGCCCAATTATTTATTGCTAATATACCAGCGGAAACATTTAATGTTACGATCTATCGCACCCATCTTTCCAGCGTTGAGGATTCAATTATTCTCTGGCAGGGTCGGGTAGTCAATGCTAAGCTCCTTGAATCGACCGCTGAAATATATTGCCAGCCACTGTATACCTCAATCAAGCGCCCAGGATTACGCCGGGCTTATCAAATAAATTGCCCTCATGTCCTATATGGGCCAAGCTGTAAGGTTGTCCGCGATTCTTTAGCAATTACAACCACCAATACAACTATCGCTGGTAATACCATAACAAGCCCAGATTTGGTTGAAACGGATGCCCTATTAGGCCCAACCTGGTATACAGGAGGTTATGTGGAAATAACTTCTGGAGGTGCTGTTGATAGAAGATTTATAACTAATTACGATAACCTATCTGGTTCTGTAACATTAAACCTCCCATTTAAAGCGCTTGCTAATAATTCAGAGATAACAGTATACCCTGGATGCGATAGGGTCGTTACAACGTGCTCCTTGAAATTCAACAATCTTGATAATTTTGGCGGTTTCCCATATATTCCCCAGAAGAACCCTATGGATGGTACCCCAATTTTCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
2becc1ba266aeef9863ec53f6ec64a590d50b6e5aaaba5e9b72bd89e850a0e2c
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,9033
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Isolation and characterization of a Shewanella phage-host system from coastal sediment Zhang,Y., Wang,Z., Li,C. and Zhao,J. 2010-07-01 — GenBank