Protein

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UniProt accession
A0A2H4P9B2 [UniProt]
Protein name
Rhamnogalacturonase A/B/Epimerase-like pectate lyase domain-containing protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence RBPdetect
Probability 0,74
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MAIAIVEELWTRIRSAIDDKIIAAQDAVDRAATSATNAKTSETAAAQSASEAEAALSTKADLIHTHTVAQVNGLQSALDGKASLVGGLIPTSQLPAVALTKPQVVSDRAGMLALTAQEGDVAVITAGADKGTYMLGPGASTNFASWVALATPTDAVTSVNGQTGVVNLSASNVGAAPSSHTHTSGQVSDATFNPTAYTIIKRDASGRAQVAAPYSAGDIATKGYVDQEVGKKAAGVSVKEHGAVGNGTTNDTAAIKAAVAALGAGGTLIIPEGRYLVTETITVSQDEARIVGSGTLAAGTSQMTVVALSGANIDATINVDGCNLAGTGVSVTGPGTVVRESYIRNILATSLFSTGISVVNGGRGATIAGNTIRNISSAGDNTVMGDASGASRGIYAYSDVPATEPLRIYDNLIDGVTGEEGDGIQIINYDGVDNNLFLKAAAKVTRNTVRNCSRRGIKIQASDVLVSGNEIFWDKPTAPTNPSYAINVINSDDVHVEGNRITKWFDQNGIQVSGPSARLSKGIRITDNDVTLPEGVNLCIYVNYLEQPTIERNTTRGGSGVIVSRSNDAVVSGNTSMGGAASTYAVWAYSNSNNTAILSNVNLNKGRTTPFRNQSVSGTTLYNW
Physico‐chemical
properties
protein length:624 AA
molecular weight: 64057,44490 Da
isoelectric point:5,32260
aromaticity:0,04647
hydropathy:-0,04359

Domains

Domains [InterPro]
DC_1036
STR
4–621
DC_1036
IPR011050
STR
233–471
IPR011050 IPR006626 IPR006626 IPR006626 IPR006626
IPR012334
STR
236–623
IPR012334
IPR024535
ENZ
236–460
IPR024535
IPR006626
Unmapped
333–360
IPR006626 IPR006626 IPR006626 IPR006626
IPR011050
STR
445–623
IPR011050
A0A2H4P9B2
1 624
Architecture
STR
STR 4-623 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
A0A2H4P9B2
1 624
Domain Start End Length (AA) Confidence
N-terminal 1 247 247 0,9247
Central domain 248 613 367 0,9957
C-terminal 614 624 10 0,1381
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-247
Central
248-613
C-terminal
614-624

Taxonomy

  Name Taxonomy ID Lineage
Phage Corynebacterium phage Zion
[NCBI] 		2047871 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)

No CDS data available.

Genome Context

Genome Context

Gene Ontology

Description Category Evidence (source)
GO:0044423 virion component Cellular Component IEA:UniProtKB-KW (UniProt)
GO:0051701 biological process involved in interaction with host Biological Process IEA:UniProtKB-ARBA (UniProt)
GO:0019058 viral life cycle Biological Process IEA:UniProtKB-ARBA (UniProt)

Tertiary structure

PDB ID
f17a4d2e45cfa5a2fb1f23b620ef26ad19ef56306d77b990621487794cf8a8b3
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8264
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50