Protein

View in Explore
Genbank accession
WYW02866.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence RBPdetect
Probability 0,90
TF
Evidence RBPdetect2
Probability 0,96
Protein sequence
MATTPKTVRTYALDGTKKDFTIPFEYLARKFVVVTLIGATRRELILNTEYRFTTNTTITTNKAWGPADNFDLIEIRRLTSATERLVDFADGSILRAYDLNISQVQSLHIAEEARDLTADTIGVNNDGDLDARARRIVNLADGVNDGDAVNLRQQKQWAGSALNSAAASAQSAAASEASRQGATQQAAAALVSAQNAAGSNTAAAQQATNSSNSATASQTSRVASEAARDLSQAWASKAEDSLVSGSLYSSYHYSRKSAASATASQTSANNSANSASFSTQEANRATTQADRAKTEADKLGNMNALGVSIREVNATGKKVEINTGWEWNSDVIAVDGFRSRSSSSIDFNAQLNGRLGASFTGNLSVGGATTLQNTTVAGLTVNTGAQFKNGNVQVFAPKASDNAHVWFYNPDGATRGIIYAGPDKSVRMQAGEVVCATFAQDGGTTLNDISAGNVTARATAYTQGGIENTGRVASYRNGVGANASMYASCHFMAQTDDGTAPAYGFHRGGSYALALYLSGNSLFMMDSVGLNREVLNNTNLGYWMVSMGEQGVGSYAFCRSGVIATYGVDVAGGNLTYGSTGANGGSVPGTWRSRGWAGGGNHTLFQRIA
Physico‐chemical
properties
protein length:609 AA
molecular weight: 63860,33160 Da
isoelectric point:7,02379
aromaticity:0,07718
hydropathy:-0,29737

Domains

Domains [InterPro]
IPR005604
ATT
1–131
IPR005604 Coil
DC_0044
STR
1–606
DC_0044
WYW02866.1
1 609
Architecture
ATT
STR
ATT 1-131 | STR 132-606 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
WYW02866.1
1 609
Domain Start End Length (AA) Confidence
N-terminal 1 304 304 0,7934
Central domain 305 503 200 0,4827
C-terminal 504 609 105 0,9772
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-304
Central
305-503
C-terminal
504-609

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage vB_PpuP-Emajogi
[NCBI] 		3132649 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Pseudomonas putida KT2440 and
[NCBI] 		1481724 Heterolobosea > Eutetramitea > Lyromonadida > Psalteriomonadidae > Monopylocystis >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WYW02866.1 [NCBI]
Genbank nucleotide accession
PP496445.1 [NCBI]
CDS location
range 34579 -> 36408
strand +
CDS
ATGGCTACTACACCAAAGACGGTGCGGACCTACGCTCTCGATGGCACCAAGAAAGACTTCACGATCCCCTTCGAGTATCTCGCTCGGAAGTTCGTTGTGGTTACCTTGATCGGTGCAACTCGACGTGAGCTGATCCTGAACACCGAGTACCGCTTCACTACCAACACGACCATCACCACGAACAAGGCATGGGGACCGGCTGACAACTTCGACCTGATCGAGATTCGCCGACTGACCTCTGCAACTGAGCGTCTGGTGGACTTCGCTGATGGTTCGATCCTTCGGGCCTACGACCTGAATATCTCGCAGGTTCAATCCCTGCACATCGCTGAGGAAGCCCGAGACCTGACCGCTGACACAATCGGCGTGAACAACGATGGTGACCTCGATGCCCGTGCTCGTAGGATCGTCAACCTTGCTGATGGCGTGAATGATGGTGATGCGGTAAACCTGCGCCAGCAGAAACAATGGGCAGGCTCTGCATTGAACTCCGCAGCCGCCAGTGCCCAGTCCGCCGCTGCATCTGAGGCTTCCCGTCAGGGAGCTACTCAACAAGCCGCTGCTGCTCTCGTGAGTGCGCAGAACGCTGCTGGATCGAACACTGCTGCTGCTCAACAGGCAACCAACAGTTCCAACTCTGCGACCGCCTCTCAGACCTCCCGTGTGGCCTCTGAAGCTGCCCGTGACTTGTCCCAAGCGTGGGCCTCAAAGGCAGAAGACTCTCTGGTCTCTGGGTCGCTCTATTCGTCCTACCACTACAGCCGCAAGTCGGCAGCGAGTGCAACTGCGAGTCAGACCTCTGCGAACAACTCTGCGAACTCTGCGAGTTTCTCCACTCAGGAAGCCAACCGGGCAACCACTCAGGCTGACCGTGCGAAGACCGAGGCTGACAAGTTGGGCAACATGAACGCTCTCGGTGTGTCGATCCGTGAAGTAAACGCGACTGGAAAGAAGGTAGAGATTAACACCGGCTGGGAGTGGAATTCCGACGTAATTGCGGTAGACGGGTTCCGCTCAAGGAGTTCGTCCTCCATCGACTTCAATGCCCAGCTCAACGGGAGACTTGGTGCCTCATTCACTGGGAACCTTTCAGTTGGAGGTGCTACCACCCTACAGAACACCACTGTAGCCGGTCTAACAGTGAACACTGGTGCCCAGTTCAAGAACGGCAACGTGCAGGTATTTGCCCCGAAGGCATCGGATAACGCCCACGTCTGGTTCTACAACCCTGATGGGGCAACCCGAGGGATAATCTATGCTGGCCCAGACAAATCGGTACGGATGCAGGCAGGTGAGGTGGTGTGTGCGACCTTTGCCCAAGATGGCGGGACCACACTAAACGACATATCTGCTGGGAATGTTACAGCCCGTGCTACTGCATATACACAAGGTGGGATTGAGAATACCGGACGTGTCGCGTCCTACCGCAACGGTGTAGGCGCAAACGCTTCCATGTATGCCAGCTGCCACTTCATGGCTCAGACCGATGATGGTACTGCTCCAGCCTACGGGTTCCACCGTGGAGGCTCATACGCCCTCGCACTGTACCTGAGCGGAAACAGTCTGTTCATGATGGACTCGGTAGGTCTGAACCGTGAGGTCCTGAACAACACGAACTTGGGTTATTGGATGGTTAGCATGGGTGAGCAAGGTGTCGGCTCGTATGCGTTCTGCCGTTCCGGCGTGATTGCTACCTACGGCGTTGACGTTGCTGGTGGAAACCTGACCTACGGCTCGACTGGCGCGAACGGTGGCTCTGTCCCCGGAACTTGGCGTTCCCGTGGCTGGGCTGGCGGTGGTAACCATACCCTGTTCCAGCGCATCGCTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
217754901bdb42d098805deaf79e996492cab2feffb51662309ab2ee5bea356a
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6639
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Isolation and characterization of a phage collection against Pseudomonas putida Brauer,A., Rosendahl,S., Kangsep,A., Rikberg,R., Lewanczyk,A.C., Horak,R. and Tamman,H. — — GenBank